KEGG T06110: 107094925

Cyprinodon variegatus (sheepshead minnow): 107094925

Entry

107094925         CDS       T06110

Symbol

aplf

Name

(RefSeq) aprataxin and PNK-like factor

K13295

aprataxin and PNK-like factor [EC:3.1.-.-]

Organism

cvg Cyprinodon variegatus (sheepshead minnow)

Brite

KEGG Orthology (KO) [BR:cvg00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cvg03400]
    107094925 (aplf)
DNA repair and recombination proteins [BR:cvg03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     107094925 (aplf)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     107094925 (aplf)

SSDB

Motif

Pfam:

zf-CCHH FHA_2 FHA Yop-YscD_cpl

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Ensembl:

UniProt:

Position

Unknown

AA seq 438 aa
MSGFGLVRVDSGDVVPLPPGETVLGRGPLLGISDTRVSRHHGLLENLNGQLRLKPTHLNP
CFILSSLNDDPRPLERGSWHPLQHGDLFSLMPGRFIYRVEAVGGEESTLRNSQNLEEKEE
EELPVPTGSIVEACPAVGPQQERISDPNGIQPGTGFKEDNSTRRPRNNKSEESPPAPRRR
VLPAWMMAAAAPKVQPAVKKREQASASSATQAPPTISSLPTGVELHEEEEEERPRKKRRK
MRGEEEHLPTETEVLSEEPDSRIQTKPSGPGVCSEADHPSMELDDEGPSQTSERISQKEE
KLSDRVRTACPYGKDCYRKNPLHFQECSHPGDDDYEEEEEEEDGDRPECPYGTDCYRKNP
LHRKEFKHTKKPARSTRNVTKNSPDEDVSEDDDSFINDDSDDLGNDSDYLPPRSDDSEQE
DVQRLQKEAKVFLKKGGR

NT seq 1317 nt +upstreamnt +downstreamnt
atgtccggcttcggactggttcgggtggacagcggtgatgtagtcccgctgccgccgggt
gagacggtgctgggtcggggtcccttgctcgggatcagtgacaccagagtttccagacac
cacgggctgctggagaacctgaacggacagctgcgactcaaaccgacccacctgaatccc
tgcttcatcctgtcctccctgaacgatgacccccgacccctggagagaggctcctggcac
ccgcttcaacacggagacctgttctctcttatgccgggtcgcttcatctacagggtggag
gccgtgggcggggaggagagcacactcagaaacagtcagaacttagaagaaaaagaagag
gaagagcttcctgttcccactggatccatcgtggaggcgtgtcctgcggttgggccgcag
caggaacggatttcagatccgaatggaatccaacctggaacaggtttcaaagaggataat
tccactcgacggccacggaacaataaaagcgaggagtctccacctgctccaaggaggaga
gttttacctgcgtggatgatggcagctgctgctccaaaagttcagcctgctgtgaagaag
cgtgaacaggcgtctgcatcctcagccacacaggctccgcccactatatcctccttaccg
acaggggtggagcttcatgaggaggaggaagaggagaggccacggaagaagagaagaaag
atgagaggagaggaagaacatttaccaacagagacggaggtgctttcagaggaaccagac
tccagaatccagaccaaacccagtggaccaggagtctgctctgaagctgaccatcccagt
atggagctggacgatgaaggtccatcacaaacgtctgaaaggatatcccagaaagaggag
aagctctcggaccgagtcagaacggcttgtccatatgggaaggactgctacagaaagaac
cctcttcatttccaagagtgcagtcacccaggagacgacgactatgaggaggaggaggaa
gaggaggatggggatcgaccagagtgtccgtatggcactgactgttacaggaagaatccc
ctccacaggaaggagttcaaacacacaaagaaacctgctcgttcgactcgaaacgtgacg
aaaaattctccagacgaagatgtctctgaagatgacgacagcttcattaacgacgacagc
gacgacctcggcaacgactcggactacctgcctcctcgctcagacgacagcgagcaggag
gacgtccagagactgcagaaggaggccaaggtcttcctgaagaaaggagggaggtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

Download RDF

DBGET integrated database retrieval system