KEGG   Cyprinodon variegatus (sheepshead minnow): 107096189
Entry
107096189         CDS       T06110                                 
Symbol
usp40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40 isoform X1
  KO
K11869  ubiquitin carboxyl-terminal hydrolase 40 [EC:3.4.19.12]
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:cvg01002]
    107096189 (usp40)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cvg04121]
    107096189 (usp40)
Enzymes [BR:cvg01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     107096189 (usp40)
Peptidases and inhibitors [BR:cvg01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   107096189 (usp40)
Ubiquitin system [BR:cvg04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    107096189 (usp40)
SSDB
Motif
Pfam: UCH UCH_1 YukD CDC37_C Yippee-Mis18
Other DBs
NCBI-GeneID: 107096189
NCBI-ProteinID: XP_015248225
Ensembl: ENSCVAG00000003361
Position
Unknown
AA seq 1282 aa
MFGNLFEEEEDEGFASTSNKGRTAKGGEEPPPPPRGRSNLCGIKNQGGTCYLNSLLQTLL
FTPEFREELFSLGPEELGRLEDKDKPGAKVRVIPLELQRLFARLLLIDHQSASTTDLTDS
FGWNSSEGTNQHDVQELNRILFSALEHSLVDTSGSTLIQRLYHGTIVNSIVCKECGNVSQ
RKEDFLDLTVCVCGVSSLEEALWNMFVEEELFEGNNLYRCAQCSRLVTAAKSAKLEQLPP
FITMSLLRFSFDFAKCERYKETGRYTFPLTINLRPFCEQSDAEDSDFTYELFSVIIHKGG
CYGGHYHVYIKDIDELGLWEPPEDDCKPKAQKKIEKEVKESSEQNLQEDDPLSIITAIIA
QESSKSVLLDQLGQKLLDKTGSSWSKRFRKHYGPIGKFLQSHSDVFILVSNGSRVALKAN
PPSQVTDTSASASEQTVTSDPSAASDRAASDTQQEANQTHKAQPEQGSHWFDLNDSAVTS
IRESDIEKQFQGKESAYMLFYRKTQLHRPGEALNNPQYKVPTQLIQMAQDENRRLQQMRE
EFEAANNTVELRLHLAPFYKMVDGVLQPVGEDQSGSINLSFDRRKTVGDLRITIYHKQEL
WEGDMALTVAKSLPAGLHLYNTLTDDGVSLYGAGIHTNTDLFVWNGMEVCGSAVQTGAEW
EPVLLTVVRPFLGEDVGQEVQNGVKCEKNGTGSENVGPGLKREARGFAGGATLGEVREAL
GEPRESLLCQEHKRGKVGGQGAGEGGGASGWRVFPPDDMQRTLKELSLKDGDALLVLEPH
SFDSSVFTRNGDVVTVTTPSDCRWLQVEFRPLINRDEEELRKTVKVPATGNMLLSEVKQR
AIEELQLLEEPSGSPYCLRQVDCSGKLLPPVFEELSVRDAGVRLMTTLTLCPGNAPKESQ
LFLHFTVGSAPSAGMEMDIIVEKTCTVKECLKAMLDAVGLDGTSWHLRRLDWCEEVGEPL
MDEDASLSDLKISNGETLVVTEGLLPPKGFLKLSVWLFMDLRSNCTEGSPAEQRMWETDA
TDGFCAPLLHGENMVELRNIGKVEISDDAMLEDLKTQVLTLPALQDVCVPVTSFLRVWQM
DGGRPTRILRGQQVTLRKLKLTSETDLCVQGLLKEEDLGPKQVLLNVKMGVPGERRYYPT
EELVWDTSKDSSPRSLRTSLAAHYGLSPDSLLLAKHQPEKHTWEEISNWTQQFSKKKKKK
KAESLLGPPFNLRDGDVIGIKNLLIDNNRDFITEEDQQGQQRLREQAEQRRKGAQAAASN
GAGKNKPRKVEVPLSISVGEFR
NT seq 3849 nt   +upstreamnt  +downstreamnt
atgtttggaaacctttttgaggaggaagaggacgaagggttcgcctcgacctccaacaaa
gggaggactgctaaagggggcgaggagccaccgcctccaccccgaggaagaagcaatctg
tgcggcattaaaaatcagggagggacctgctacctcaactctctgctccagactctgctg
ttcaccccagagtttagagaggagctgttcagtttgggaccagaagaattggggcgtctt
gaggacaaagacaaaccaggagccaaagtcagggtgattcctctggagctccagcgattg
tttgcccgtctgttgctaatagaccatcagagcgcctccaccactgacctcacagacagc
ttcggctggaacagcagcgaggggacgaatcagcatgatgtgcaggagctcaacaggatt
ttgttcagtgcattggagcactcccttgtggacaccagcggcagtacattgatccagcgc
ctctaccatggtaccatcgtcaacagcattgtgtgtaaggagtgtggaaacgtgagccag
aggaaggaggacttcctggatttgacagtgtgtgtttgtggcgtgtccagcctggaggag
gctctgtggaacatgtttgtggaggaggagttgtttgaaggaaacaacctttatcgttgt
gctcagtgctccaggttggtcactgcggccaagtcggccaagctggagcagctgcccccg
tttatcaccatgtctttgctgcgattcagctttgactttgccaaatgtgaacgatacaag
gagaccggacgctacaccttcccgctcaccatcaatctgagaccattttgtgagcagtct
gatgcagaggactctgatttcacatatgaactgttttccgtgattatccacaaaggaggc
tgctatggcggccattaccatgtttacatcaaagatatcgatgagcttggactgtgggag
ccgccggaagatgactgcaaaccaaaagctcaaaagaaaattgagaaggaagtcaaggag
tcatctgagcaaaacctacaagaagacgaccctttgtctattattactgcaatcattgct
caggagtcttcaaaaagtgttttattggatcagctgggtcaaaagcttctggataaaact
ggatcatcctggagcaaaaggtttagaaaacactacggtccaattggaaagttcctgcag
tctcacagtgacgttttcattttggtgtccaatggatcccgggtggcactgaaggcaaac
cctccaagccaagtgactgatacctctgcttctgcatcagagcaaaccgtgacctctgac
ccttcagcagcttcagacagagccgcctctgatacgcagcaggaggcaaatcaaacgcat
aaagcacaaccagagcagggtagccactggtttgacctgaatgactcggctgtgacttcc
atcagggagtcggacatcgagaagcagttccagggcaaagagagcgcctacatgctgttc
tacagaaaaacacagctgcacaggcccggcgaagctctaaacaatcctcaatataaagtt
cctactcagctcatccagatggctcaggatgagaaccggaggctgcagcagatgcgtgag
gagtttgaagccgccaacaacacagtggagctgcgtctgcacctggcccctttctacaaa
atggtggatggagtcctgcagccagtcggcgaggaccaaagtggaagcattaacctgagc
ttcgaccggaggaagaccgtcggagatctgaggataactatttaccataagcaggaattg
tgggaaggcgatatggcgttgacggtagccaagagcctacctgctggtttacacctctac
aatactctgacagatgacggcgtttctctctacggtgcaggaatccacacgaatactgat
ctgtttgtctggaatgggatggaggtttgtggctccgcagtccaaactggagctgaatgg
gaacctgtattactcactgtcgtccgtccgtttctgggcgaagatgttgggcaggaagtg
caaaatggggtgaaatgtgagaaaaacggaacaggctctgaaaatgtcgggccaggactg
aaaagggaagctagggggtttgcggggggcgcaactcttggggaggtgagggaggcactt
ggggagccgagggagagcctactgtgtcaggagcataaaagaggaaaggtgggaggtcag
ggggcgggggagggagggggtgcgagcggatggagggtgttcccgcccgatgacatgcag
cggactttaaaggagctgtcgctgaaggatggagatgctctgctggtgttggagccgcac
tcattcgacagcagtgtgttcacccgaaatggagatgtggtcactgtgactacgccgtca
gactgccgctggctccaggtggagttccgaccactaataaacagagacgaagaggaacta
aggaagactgtaaaggttccagccacaggaaatatgctgctatctgaagtgaaacaaaga
gccatagaggagctgcagctgctggaagaaccttcaggttcgccgtactgtctgaggcag
gtggactgctctgggaaactccttcctccagtattcgaggagttaagtgttcgggatgca
ggcgtgcgactcatgaccacgttgactctctgcccgggaaatgcccctaaggaatcacag
cttttcttgcactttactgttggttcagccccctctgctggcatggagatggacataatc
gtagagaagacatgcaccgtcaaagaatgtcttaaagctatgctggatgctgttgggctt
gatggtaccagttggcacttaaggaggctagattggtgtgaggaagttggagagccacta
atggatgaggatgcttccctgtcagacctcaagatcagcaatggagaaacgctagttgtt
acagaaggacttttaccaccaaagggctttctcaaactttctgtgtggctttttatggat
ctgagatctaattgcacagaaggcagtcctgctgagcagcggatgtgggaaacggatgct
actgatggattttgtgctccgttactgcatggtgaaaacatggtggagctaagaaacatt
ggaaaggttgagatatccgatgatgccatgctggaagacttaaagacccaggttttgacg
ctaccagcactccaggacgtatgtgtcccggtcactagtttcctgcgtgtttggcagatg
gacggagggcgtccaacacgtatacttagaggacaacaagttacactcaggaagctgaag
ttgaccagtgagacagatctttgtgtgcagggcctcctcaaagaggaagatcttgggccg
aaacaggtgctgctgaatgtaaagatgggtgttccaggagagaggaggtattatcctaca
gaggagctggtttgggacacttccaaggactcttctcctcgatctctgcgcaccagtctg
gctgcgcattacggcctctctcccgattctctgctgctcgccaaacatcagcctgaaaaa
cacacctgggaagaaatctccaactggactcagcagttttctaaaaagaagaaaaagaaa
aaggcagaatcccttttggggccgccatttaaccttagagatggagatgtgattggtatt
aagaaccttttgattgacaataacagggacttcatcacagaagaggatcagcagggccag
cagaggctcagggaacaggcagagcaacgcaggaaaggagcgcaggctgcagcctccaac
ggtgccgggaaaaacaaacccaggaaggtagaggtgccgttgtccatcagcgttggagag
ttcagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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