KEGG   Cyprinodon variegatus (sheepshead minnow): 107102485
Entry
107102485         CDS       T06110                                 
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03013  Nucleocytoplasmic transport
cvg03015  mRNA surveillance pathway
cvg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107102485
  09122 Translation
   03013 Nucleocytoplasmic transport
    107102485
   03015 mRNA surveillance pathway
    107102485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvg03019]
    107102485
   03041 Spliceosome [BR:cvg03041]
    107102485
Messenger RNA biogenesis [BR:cvg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107102485
Spliceosome [BR:cvg03041]
 Complex C
  Other components
   EJC/TREX
    107102485
SSDB
Motif
Pfam: RSB_motif SAP
Other DBs
NCBI-GeneID: 107102485
NCBI-ProteinID: XP_015257297
Ensembl: ENSCVAG00000009841
Position
Unknown
AA seq 1196 aa
MADEDITLDGKPLQSLRVADLKAALEQRNLPKSGQKNTLIKRLKGALMLENLQRSSSSHS
GLQPNSQIGEEMCQNSFIKQYLAQQQELLRQRLAREAQREEEADESPAGAEEDEDQSEEN
DSPPFTSKHQGTLEQPSGPDVGGDNSVSGRGSAPASHRRESTEAPRARLQRGPQGPKEPS
ATSPPRAVASFSVRVLGQPDMQGYAAALPPGQEKEAATPKKAQPALNLSRSARSSAENHV
KDDSDEEEEDDDDSDEDEDWGPGPGGARRRKATVPSKQPVAPSASSATARSKRKLQPPQH
IPPPQVHDTPMQLRHPTPPPSPPPNLFPLPDTPKQSPPDDQERGAPDGMDSFPPPPMQRQ
DSGSSSGSSSPEPPVKRRFGPLSLLMDRMESEEGTSSPGFSGETAHSTATCSSESPLPSS
ETKTQQEGERQLKEEREGERLKRQEQEMEKKRLEEEKEKERERLQEERKQRQKEEEEKRY
QELEKEKKHKEEEKRREEQRLKEEEEKKQEEQRNNQKAAAAEKDSDSSSDSDSKSESSSR
SSSSSSSSSSSRDKVQPASQLKKADEGQRAEINEKTKLNKDSEKPNLSKREVSEPSTAAV
TEVEPDSESSMAQQPASGAEPESSESRTEESTTPKVFAARKISLSSSKASPASTDGGAGE
SETGNAAGRKRRWGSSTAVTVKKPSISITTDSLKSLIPDIKVNQDAVVDLHPEELQTSGD
EENSDAGRSDPDKGLKIRRTVTQVVPSESQENGQTNVEEEMEKTDDEKQPKTPREKKSSV
SEETSETQITVSLDGEAKKVPSGEESKSVVTMEVDKKLPVTPSDSLVRRSISQQKSGVSV
TIDDPVRTSRQPSPPRGKISNIIHVINLVRPFTLLQLKELLNRTGTVVEEGFWIDKIKSH
CYVTYTTTEEAVATRTALHGVKWPASNPKVLSVDFCEQDELDYHKGIRKPEKEQEQAIPA
PVPAPPQPRLPPLMPVRDRDKEQDRERERDRERDRGVRDLWAERQREMERRERARGEREW
DRDKVREFARPGEEGRRSRSRERERRRRERAKSKEKKTDKKEKDEPPAKLLDDLFLKTKA
APCIYWLPLTEEQANQRILDRVERQKERERRRKELDEENSKKRDEEKKERLKGREKEVGA
VAASGGPSGRGADAERSRDREGDKRRDSSHRSRRASPVSGSGRRSRSRSNPRDRRR
NT seq 3591 nt   +upstreamnt  +downstreamnt
atggcggacgaagatattacgcttgatggaaaacctctacagtcgctccgagttgcggat
ttgaaagctgctttggagcaaaggaacctaccaaaaagcgggcagaaaaacactctaata
aagcgacttaaaggggctctgatgctggaaaacctacagaggtcatcatcttctcacagt
gggctgcagcctaattcacagataggagaagagatgtgtcagaacagtttcattaaacag
tacctggcccagcagcaagagctcctacgacagagacttgcgagagaggcccagcgggag
gaggaggccgatgaaagcccagctggagcagaggaagatgaagaccagtctgaagaaaat
gacagccctcccttcaccagcaagcatcaaggcaccctggagcagccctctggtcctgat
gttggaggggataactctgtgagtggtcgtggatctgctcccgcttcccaccgccgagag
tctactgaagccccaagagctcgtttgcagcgcggcccccaaggacccaaggagccatca
gccacctcccctccacgagctgtcgcctccttctcagtccgtgtcctgggacagcctgac
atgcaaggatacgcagccgctttgcccccaggccaggagaaggaagcagccactccaaaa
aaagctcagcctgcgctcaatctcagccgctccgcccggagttccgctgaaaaccacgtt
aaagacgacagcgacgaggaggaggaggacgatgatgacagcgatgaagatgaggattgg
ggaccgggtcctggaggggcaagaaggagaaaggcaacggttccctcaaagcagccggtg
gctcccagtgcatcatcagctactgcaagatccaaacgcaagcttcagcctcctcagcac
atccctcctccgcaggtacacgacactcccatgcagctgcgtcacccaacacctcccccc
tctccaccccctaacctcttccccctacctgacactccaaagcaaagccccccagatgat
caagaaagaggagctccagatgggatggactctttcccgcctccccccatgcagaggcaa
gactccggctccagctccggctccagcagccccgagcctcctgtgaagcgccgcttcggc
cccctctcactgctcatggacaggatggagtcagaggaagggacctcatctcctgggttc
tccggagaaacggcacattcaaccgccacatgttccagtgaatcccctcttccgtcatcg
gaaacaaaaacgcaacaggaaggagagagacagctgaaggaggagagggagggagagcgt
ctgaaaaggcaggagcaagaaatggagaagaaacgcctggaggaagagaaggaaaaggaa
agagaacggctgcaagaggagaggaagcagcgacagaaagaggaagaggaaaaaagatac
caggagttggaaaaagaaaagaaacacaaagaggaggagaagagaagagaggagcagcgg
ttaaaggaggaggaagaaaagaaacaagaggagcagaggaataaccagaaagcagcagct
gctgaaaaagattcagactcctcctcagattcagactccaaatcagagtcttcctcacgc
tcatcatcatcatcatcctcttcttcctcctccagggataaagttcagcctgccagtcag
ctgaagaaggcagacgaaggacaaagggcagagattaatgaaaagactaagttgaataaa
gactctgagaaacctaacctttcaaaaagggaggtgtccgagcccagcacagctgccgtt
accgaggtggaaccggactctgagagctccatggcccagcagccagcatctggggctgag
cctgagagcagcgagagccgcacggaggagagcaccactcctaaggtttttgctgctcgc
aagatatccctgtccagcagcaaggcatctccagccagcacagatggaggagcaggagag
tctgaaacggggaacgctgcagggaggaagaggcgatggggctccagcacagcagtcact
gttaagaagccatcgatcagcatcactacagactccctaaagtctctgattccagacatc
aaggtgaaccaggacgcagtggtggaccttcaccccgaggagctgcagacgtccggagac
gaggagaactctgacgccggtcggagcgaccctgataaaggcctcaagatccgacgcacc
gttacccaggttgttcccagtgaaagccaggaaaacggacaaactaatgtagaagaagaa
atggagaaaacagacgatgaaaagcagccaaagactccacgagaaaagaagagcagtgtg
tctgaggaaacgtctgagacgcagatcactgtcagcctagatggagaggcaaagaaagtt
ccttccggtgaagaatcgaagtctgtcgttaccatggaagtggataaaaaactaccagtg
actcccagcgacagtctggtgcggcgctccatcagtcagcagaagtctggcgtttccgtc
acaatcgacgaccctgttcgcacatccaggcagccctcaccgcctcgaggaaaaatctcc
aacatcattcatgtgataaacctggtccgacctttcactctgctccaactcaaagagctg
ctgaaccgaacggggaccgtggtggaggagggtttctggatcgacaagatcaagtctcac
tgctacgtcacatacacaacaacagaggaggcggttgccaccaggacggctcttcatgga
gtcaaatggcctgctagtaaccctaaggtgctcagtgtggacttctgtgagcaagatgag
ctggactatcataaaggcatccggaagccagagaaagaacaggagcaggccatccctgct
cctgttcctgctcctcctcagccaaggctgccccctctgatgcccgtacgggacagggac
aaggagcaggacagagagcgggagcgtgatcgggaacgggacagaggagtccgggatctg
tgggcagagcgacagagggagatggagcggcgagaacgggctcgaggggagcgagagtgg
gaccgggacaaggtccgggaattcgccagacccggagaggaggggcggcgatctcggtcc
agagagagggagaggaggaggagggagagagcaaagagtaaggagaagaagactgataag
aaggagaaagatgaacctcctgctaaactactagacgacctgttcctgaagaccaaagca
gctccctgtatatactggctccccctcaccgaggagcaggcgaaccagaggattctagat
cgcgtggaacggcagaaggagcgcgaacgaaggcgcaaggagctagacgaggagaacagc
aagaagcgggacgaggagaagaaagagaggctcaaggggcgggagaaggaggttggcgct
gtcgcagcaagcggcggaccttccgggagaggagccgacgccgagcggagccgagacaga
gaaggggacaagaggagggacagcagccaccgatccagacgagcctcgccggtgtcaggc
agcggacggcgctcccgtagtcgcagcaacccccgggacaggcgccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system