KEGG   Chromobacterium violaceum: CV_4073
Entry
CV_4073           CDS       T00147                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
cvi  Chromobacterium violaceum
Pathway
cvi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CV_4073 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cvi03400]
    CV_4073 (recD)
Enzymes [BR:cvi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CV_4073 (recD)
DNA repair and recombination proteins [BR:cvi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CV_4073 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 AAA_11 Helicase_RecD SH3_13 AAA_22 UvrD-helicase SLFN-g3_helicase T2SSE UvrD_C nSTAND3 CbiA AAA_16 AAA_24 AAA_25 Mg_chelatase AAA_28 RecD_N TrwB_AAD_bind FtsK_SpoIIIE GvpD_P-loop SRP54 AAA_7 ATPase Rad17
Other DBs
NCBI-ProteinID: AAQ61733
LNCC_Brazil: CV4073
UniProt: Q7NQR4
Position
complement(4405946..4407643)
AA seq 565 aa
MRTDTPLLPGQLARLFQRLAPDVDDRVLALIGELSNANLAGHVCLPLAHRGEAAALRGSP
LVGRPGEYAPLILDEAGRLYFARHWHDEDRLVQGLERLAQPLPPQDEARLADWLNRLFPG
AGDGEPDRQKLAAALAARQRLMVISGGPGTGKTTTVVRLLALLAAMSPRPLVMAMAAPTG
KAAARLSESVRAARDRLDADDAVRRQLPAQAETLHRLLGLRPGVEAPRHHASNPLPLDVL
VVDEASMIDLSLMARTVAALPSQARLILLGDRDQLSSVEAGAVLGELCGRIAYRDETSQW
LQRVAGAVLQGDAAPGGALTDCVALLTRSHRFGADSGIGELARRVNAGEGQGSLHVLDDA
GWPDVWRQDAADDAELLARRRGYLDAVAAGAGADEAQRAFSAFMLLAAERRQVADCNRRI
ERELEAAGVKQPGRDWYPGRPVMIGENDYGLGLFNGDIGFALQRPSGLRVLFPSADGGWR
EFAPGRLPAHETVFAMTVHKSQGSEYDEVWLQLPQQAGALLNRALLYTAITRAKLRFAAV
GDAEAWLRGAELAPRRDSGLGDRLH
NT seq 1698 nt   +upstreamnt  +downstreamnt
atgagaaccgataccccgctgttgcccggccaactggcccggctgttccaacgcctggcg
cccgacgtcgacgacagggtgctggcgctgatcggcgaattgagcaacgccaacctggcc
ggccatgtctgtctgccgctggcgcaccggggcgaagcggcggcgctgcgcggcagtccg
ctggtcggccggccgggcgagtacgcgccgctgatcctggacgaggccgggcggctgtac
ttcgcccgccattggcacgacgaagaccggctggtccaggggctggagcgattggcccag
ccgctgccgccgcaggacgaggccaggctggccgattggctgaatcgcctgtttcccggc
gcgggcgacggcgagccggaccggcagaagctggcggccgcgctggccgcgcgccagcgg
ctgatggtgatctccggcggacccggcaccggcaagaccaccacggtggtgcggctgctg
gcgctgctggcggcgatgtcgccgcgtccgctggtgatggcgatggccgcgccgacgggc
aaggcggcggcgcggctgtccgagtcggtgcgcgcggcgcgcgaccgattggacgcggac
gacgcggtgcgccgccagttgccggcgcaggcggagacgctgcaccggctgctgggcctg
cgtcccggcgtcgaggccccgcgccatcacgcaagcaatccgctgccgctggatgtgctg
gtggtcgacgaggcgtcgatgatcgacctgtcgctgatggcgcgcacggtggcggcgctg
ccgtcgcaggcccgcttgatcctgctgggcgaccgcgaccagctgtcttcggtggaggcg
ggcgccgtgctcggcgagctgtgcggccgcatcgcctatcgcgacgagacctcgcagtgg
ctgcagcgggtggccggcgccgtcttgcaaggcgatgccgcgcccggcggcgcgctgacc
gactgcgtggcgttattgacgcgcagccaccgcttcggcgccgactccggcatcggcgag
ctggcgcgtcgggtcaacgccggcgaagggcagggttcgctgcatgtgctggacgacgcc
ggctggcccgacgtttggcgccaggacgccgccgacgacgccgagctgctcgcgcgccgg
cgcggctacctggacgcggtggcggccggcgcgggcgcggacgaggcgcagcgcgcgttt
tccgccttcatgctgctggccgccgagcggcgccaggtggctgactgcaaccgccgcatc
gagcgggagctggaggccgccggcgtcaagcagcctggacgtgattggtatccgggccgg
ccggtgatgataggcgagaacgattacgggctgggcctgttcaacggcgacatcggcttc
gccttgcagcggccgtcaggcctgagggtgttgtttccgtccgccgacgggggctggcgg
gagttcgcgcccggacggctgccggcgcacgagacggtgttcgcgatgacggttcacaag
agccagggctcggagtacgacgaagtgtggctgcaattgccgcagcaggccggcgcgctg
ctgaaccgcgcgctgttgtataccgccatcacccgcgccaagctgcgtttcgccgcggtg
ggcgacgccgaagcatggctgcgcggggcggagctggcgccgcgccgcgattccggcctg
ggtgaccggctgcattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   LNCC_BRAZIL (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (27)   
   Pfam (27)   
All databases (45)   

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