KEGG   Cyanothece sp. PCC 7425: Cyan7425_0676
Entry
Cyan7425_0676     CDS       T00836                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cyn  Cyanothece sp. PCC 7425
Pathway
cyn03030  DNA replication
cyn03410  Base excision repair
cyn03420  Nucleotide excision repair
cyn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cyn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Cyan7425_0676
   03410 Base excision repair
    Cyan7425_0676
   03420 Nucleotide excision repair
    Cyan7425_0676
   03430 Mismatch repair
    Cyan7425_0676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cyn03032]
    Cyan7425_0676
   03400 DNA repair and recombination proteins [BR:cyn03400]
    Cyan7425_0676
Enzymes [BR:cyn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Cyan7425_0676
DNA replication proteins [BR:cyn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Cyan7425_0676
DNA repair and recombination proteins [BR:cyn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Cyan7425_0676
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cyan7425_0676
   MMR (mismatch excision repair)
    DNA ligase
     Cyan7425_0676
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Cyan7425_0676
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT HHH_3 BRCT_2 zf-ribbon_3
Other DBs
NCBI-ProteinID: ACL43064
UniProt: B8HV17
Position
477467..479683
AA seq 738 aa
MSNLEHEAERVEMAAATTEIRQRVLELRQLVQRASYAYYVLDAPILEDVVYDQLYRELQD
LETQYPELLTPDSPTQRVGEQPATQFVSVQHRIPLYSLENAFAVADMQAWQDRWQRQGQA
IGEQSATLRSPEYVCELKIDGSALALTYENGVLVRGATRGDGVYGEDITANVRTIRSIPL
RLDWPDPPPIVEVRGEAFLPLDVFHRLNQEREQAGESLFANPRNAAAGTLRQLDARIVAK
RRLDFFAYTLHLPLASARSATQPAAAQQLDLLAVAQSDPAVAAQQLDLSSASQAESVTTH
LPQTQWQSLELLQQIGFRVNPHRQLCPTLADVRQYYDHWNHGRLDLPYMTDGVVVKLNSL
RLQEHLGFTQKFPRWAIAWKYEPEQAVTEVLNISVNVGRTGALTPVAELRPVQLAGTTVS
RATLHNRDRLAELDLHIGDKVVIHKAGEIIPEILQVFPELRPADARPYQLPTHCPECGQP
VVQPVDEAVTRCLNVSCPAIVRGAIVHWVGRDAMDIDGVGEKLVRQLVDRGLVNSVADLY
RLTVAQLLTLERMGNKLAEKVVAAIAKSQSRPWSRVLYGLGIRHVGSVNAQVLTTAFPSV
ERLMAASAEDIEAVHGIGPEIAQSIVQWFQTPANHSLIEQLSAAGVQLAQDTVAVPPSQL
PQPLAGKTFVLTGTLPTLSRDEARSMIGQAGGKVTDSVSKKTDFLVVGADAGSKLDKAGQ
LGIPCLSESQLLELLEET
NT seq 2217 nt   +upstreamnt  +downstreamnt
atgagcaaccttgaacacgaagctgaaagggtagagatggcagcggcaacaacggaaatc
agacaacgggtgctggaattgcgccaactggtgcagcgagctagctatgcctactacgtg
ctggatgctcccattctggaagatgtcgtttacgatcagctctaccgggaattacaagac
ctggaaactcagtatccggaactgctcacacccgatagtccgactcagcgagtgggggag
caacccgccacccagtttgtctccgttcaacaccgcattcccctctacagtctggaaaat
gctttcgcggtggcagatatgcaggcctggcaggatcggtggcaacggcaggggcaggcc
atcggtgaacaaagcgccactttacggtcaccagaatacgtctgtgagttaaaaattgat
gggtctgccctggccctgacctacgagaatggggtactggtgaggggggcaacgcgagga
gatggggtttacggcgaagatattactgccaatgtgcggacgattcgctccattccgctg
cggttggactggcccgatcctcctccaattgtggaagtgcggggtgaagcgtttttaccc
ctggatgtttttcaccgcttaaatcaagagcgtgagcaggcgggagaaagtttatttgcc
aatccccgcaatgccgcggccggaactctgcgccaactagatgcccggattgtggctaaa
cgacggttagatttttttgcctatactctgcaccttcccctggcctctgcccgttctgct
actcaacccgctgctgctcaacaattagatttattagcggtagctcagtccgatccggcg
gtggcggctcaacagttagatctttcatccgccagtcaggctgagtcagtcacgactcat
ttgccccaaacccaatggcaaagtctggagttattgcaacagattgggtttcgggttaat
ccccatcgccaactttgtcccactctggcggatgtgcgccaatactatgaccactggaat
cacggccgcctcgatctgccctatatgaccgatggcgtggtggtcaaactgaatagtcta
cggctgcaggaacatctgggttttacccaaaagtttccccgctgggcgatcgcctggaaa
tatgaaccggaacaagccgtcaccgaggtgctgaatattagtgtgaatgtggggcgaaca
ggagccttaaccccggtggctgaactccgtcccgtccaacttgcgggtacaacggtgtct
cgagctaccctgcacaaccgcgatcgcctggctgaactggatctgcacattggcgataaa
gtggtcatccacaaggccggagaaattattcctgaaattctgcaggtctttcccgaactg
cgtcctgccgatgcccgtccctatcaactgcccacccattgtccagagtgcggtcaacct
gtggtgcagcctgtggatgaagccgttacccgttgtcttaatgtctcctgtccggcgatc
gtgcggggggcgatcgtccattgggtggggcgggatgccatggatattgatggagtagga
gaaaaactggtgcggcagttagtggatcgcggtctggtaaactcggtcgcagatctttac
cggctgacggtggcccaattgttaaccctggagcggatggggaacaagctggcggaaaaa
gtggtggcggcgatcgccaagtcccagtcacgaccatggtcaagggtcctctacggtttg
ggaattcgccatgtggggagtgtcaatgcccaggtcttaaccacggccttccccagtgtt
gagcggctcatggctgcctcagcggaggatattgaagccgtgcatggcattggtccagaa
attgcccagtcaattgtgcaatggtttcaaacccctgccaaccatagcctgattgagcag
ttgagtgccgctggtgtgcagttagcccaggacacggttgctgttccccccagccagctc
ccccaaccccttgcgggtaaaacctttgtcctgacgggcaccctgcctaccctgagtcgg
gatgaagccaggtccatgattgggcaagccggagggaaggtaaccgattctgtcagcaaa
aaaactgattttttagtggtgggagcagacgctggttctaaactagacaaagccggacag
ttggggattccttgcttgagcgagtcccagttacttgaattactggaagaaacatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (32)   

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