KEGG   Candidatus Atelocyanobacterium thalassa: UCYN_08020
Entry
UCYN_08020        CDS       T01159                                 
Name
(GenBank) Excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
cyu  Candidatus Atelocyanobacterium thalassa
Pathway
cyu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cyu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    UCYN_08020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cyu03400]
    UCYN_08020
DNA repair and recombination proteins [BR:cyu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     UCYN_08020
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      UCYN_08020
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD Helicase_C_2 AAA_30 AAA_22 UB2H
Other DBs
NCBI-ProteinID: ADB95494
UniProt: D3EPU4
Position
911790..913784
AA seq 664 aa
MFQLKAPFKPTGDQPRAIEELILSLKEGNKFQTLLGATGTGKTFSIASVIDKIKKPTLIL
AHNKTLAAQLCNELRNFFPNNAVEYFISYYDYYQPEAYIPLSDTYIEKSASINDEIDMLR
HSATRSLFERQDVIIIASISCIYGLGMPSEYLKASIPLEVGREINQRQLLRDLVNVQYSR
NDMELKRGRFRVKGDILEIVPAYEDRVIRIEFFGDEVDSIRYLHPVSGDILEDLKKINIY
PARHFVTRKDRLDASCKAIAEELEQQIVNFEQAGKLLESQRISQRTRYDLELLREVGYCN
GVENYSRHLAGRESGESPECLIDYLPKDWLLVVDESHVTIPQIRGMYNGDQARKKVLIDH
GFRLPSAADNRPLKSDEFWSKVNQCIFVSATPGEWELEKSEDKVIQQVIRPTGILDPKIS
VRPTKNQVDDLLGEIKDRVQRQERILVTTLTKRMAEDLTEYFQEREVKVRYLHSEIKSIE
RIEILQDLRNGEFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRGEKSLIQIIGRAAR
HINGQAILYGDKLTDSMIKAIEETERRRHIQSSYNDKNNIIPKSIISERNNSILNYLDIS
RSLDTEKLEEICDHIEEISLDKIPELIKQLESKMEKSANQLDFELAAKYRDQIKHFRDKM
LGRL
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgtttcagttaaaggcaccttttaagccaacaggagatcagcctagggctattgaagaa
ttaatattatccttaaaggaaggaaataaatttcagaccttgctaggagcaactggaaca
ggtaaaacattttccattgcttcagtaatcgacaaaatcaaaaaaccgaccttgatccta
gctcataataaaaccttggctgcccaattatgtaatgaattaagaaattttttccctaat
aatgctgtggaatattttattagttattatgactattatcaacctgaagcttatattcct
ctcagtgacacttatattgaaaaaagtgcctcaattaatgacgagatagatatgttaaga
cattcagctactcgctcattatttgagcgacaagatgtcattattatcgcatctattagt
tgtatttatggattaggaatgccctctgaatatctaaaagcctctattcccctagaagta
ggaagagagattaatcaacgtcaacttctcagagacttggttaatgttcaatattccaga
aatgacatggagttgaaaagaggacgatttagagttaaaggagatattttggaaattgtt
cctgcttatgaagatcgagttattagaatcgaatttttcggagatgaagttgatagtatt
cgatacttacatccagtttcaggagatattttagaagatcttaaaaagattaatatttat
ccggcacgtcattttgttacgcgaaaagatagactagatgcctcttgtaaagctattgct
gaagaattagaacaacaaattgttaattttgaacaagccgggaaattattagaatcacaa
cgtataagtcaaagaacacgctatgacttagaacttttacgtgaagtaggatattgtaat
ggtgttgaaaattattctcgccacttagcaggaagagaatcgggagaatctccagaatgt
ttaattgattatttacccaaagattggttattagtcgtagatgaatctcatgtaacaata
ccgcaaattagagggatgtataatggcgatcaagcaagaaaaaaagttttaatagatcat
ggttttcgtcttccaagtgcagctgacaatcgccctcttaaatcagatgaattttggagt
aaagttaatcagtgtatttttgtctctgctacccctggtgaatgggagcttgaaaagtca
gaggataaagtcattcaacaggtaattagaccaacaggtatacttgatccaaagatatct
gtaagacctacaaaaaatcaagtggatgatttattaggagaaattaaagatagagtacag
agacaggaaagaattctagttaccactttaacaaaacgtatggcagaagacctaactgaa
tattttcaagaaagagaagttaaagttagatatctacactctgaaatcaaatctattgaa
cgtattgaaattttacaagatttaagaaacggagaatttgatgttttaattggggttaat
ttgcttagggaagggctagatttaccagaagtttctttagtagctatattagatgcagat
aaggaaggctttttaagaggtgaaaaatctttaatccagattattggacgtgcagctcga
catattaatggtcaagctattttatacggggacaaacttacagatagtatgattaaagct
atagaagaaacggaaagaagaagacacatacaatcatcatacaatgataaaaataatatt
atccctaaatctataattagcgagcgcaataattctatcttaaactaccttgatatttct
cgcagtttagataccgagaaacttgaagaaatctgtgatcatatagaagaaatatcttta
gataaaatacctgagttaatcaaacagttagaatctaaaatggaaaaatctgcaaatcaa
ttagactttgaattagcagcaaaatacagagatcagattaaacattttagagataagatg
ttaggacgcctataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (35)   

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