KEGG   Candidatus Atelocyanobacterium thalassa: UCYN_09010
Entry
UCYN_09010        CDS       T01159                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cyu  Candidatus Atelocyanobacterium thalassa
Pathway
cyu03030  DNA replication
cyu03410  Base excision repair
cyu03420  Nucleotide excision repair
cyu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cyu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    UCYN_09010
   03410 Base excision repair
    UCYN_09010
   03420 Nucleotide excision repair
    UCYN_09010
   03430 Mismatch repair
    UCYN_09010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cyu03032]
    UCYN_09010
   03400 DNA repair and recombination proteins [BR:cyu03400]
    UCYN_09010
Enzymes [BR:cyu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     UCYN_09010
DNA replication proteins [BR:cyu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     UCYN_09010
DNA repair and recombination proteins [BR:cyu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     UCYN_09010
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     UCYN_09010
   MMR (mismatch excision repair)
    DNA ligase
     UCYN_09010
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      UCYN_09010
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD BRCT_2 PTCB-BRCT HHH zf-C4pol Mut7-C RNA_POL_M_15KD
Other DBs
NCBI-ProteinID: ADB95585
UniProt: D3EQ35
Position
complement(1031936..1033984)
AA seq 682 aa
MNNLNIQKTIIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLISSDSV
TQRVGEKPALHFNSVKHDIPLYSLENAFNLQELEAWENRNQKYLKSQENQLIKYIAELKI
DGSALSLTYENGLLTRGLTRGDGIVGEDITQNIRTIFSIPLHLNLDDPPSIMHVNGEAFL
PLDEFKRINKQKQKEGKSLFANPRNAAAGTLRQLDSKIVSERKLQFFAYSLYADNLDIKS
QWDTLKFLQECGFLVNPYYRLCKSLDTVTNYFNEWKSAKKHLPYMTDGVVIKINSHILQK
ELAYTQRFPRWAIALKYPAEEISTVVEDIIFNTGRTGAVTPMAVMNPVLLGGTIVRKATL
HNIDRIAQLGICIGDTVTIRKAGEIIPEVIRVLKTLRHHKTKVFQISERCPKCNSMLVSF
SNEAVVRCINNSCPAILKGNLIHWSSRDAVDISGLGEKIIDLLISNGLVNSISDLYHLNF
QEVSNLERMGIKSAENLIKSIESSKTKSWTKVLYGLGIHHVGYTTAILLTENFSSVQQLL
QAPYDTLVTIKGIGKEVAYSIRSWFSLEENQKLISELDKNGFVLENKNLGINQNKPDKQI
FFNITFVITGSLNTLKRSEIKNLIENFGGKVVNSVTKKTNYILVGENPGSKLAEGMKLNI
IRLNETDFLRILKDANIEINEI
NT seq 2049 nt   +upstreamnt  +downstreamnt
gtgaataatttaaatattcagaaaacaatcataaaacttcgtaaacatcttcagcaagct
aattatgcttatcatgttttaaatgagtccataatggaagactcagtgtatgatcagctg
taccgacagttatacaatttagaacaaagaaatccaaatctcatcagctctgacagtgtt
acacaaagagtaggagaaaaacctgcccttcattttaattctgttaaacatgatattcct
ctatatagtttagaaaatgcctttaatttacaagaattagaagcttgggaaaatcgtaat
caaaagtacttaaaatcacaagaaaatcagttaataaaatatattgcggaattgaaaatt
gatggctcagcactatcgttgacatatgagaatggactattaacacgtggtttaacaaga
ggagatggaatagtaggagaagatattactcaaaatattcgtaccattttttctattcca
ttacatctaaatttagatgatccaccttccattatgcatgtaaatggggaagcattttta
cctctggatgaatttaagagaattaataaacagaagcaaaaagaaggcaaatcattgttt
gccaatcccagaaacgcagctgcaggaactctaagacagctagattcaaaaattgtgagc
gaacgaaagttacaattttttgcatactctttatatgctgataatttagatattaaaagt
caatgggatactttaaaatttctacaagaatgtggatttttagttaatccttactatcgg
ctatgtaagtctcttgatacagtaactaactactttaatgagtggaaaagtgcaaaaaag
catttgccctatatgacggatggagttgtgataaagattaattctcatatcttgcagaaa
gaattggcttatacacaaaggttccctcgttgggcaatcgcattaaaatatcctgcagag
gagatctcaacagtagttgaagatatcattttcaatacaggaagaactggagctgttact
ccgatggcagtaatgaacccggttcttctcggtggaacaatagtccgcaaggctacttta
cataatattgatcgtattgctcaattaggaatttgtatcggagatacagtcactattcgt
aaagctggtgaaataataccagaagtaattcgggtactaaaaacattacgtcatcataaa
accaaagtttttcaaatctctgaacgatgccctaaatgtaatagcatgcttgttagtttt
tcaaacgaggcagtggttcgttgtattaataattcttgtccagcaattttaaaaggaaat
ttaattcattggtcttcaagagatgctgtagatatttctggtttaggtgaaaaaattata
gatcttttaatcagtaatggcttggtaaattctatttcagacttgtatcatttaaatttt
caagaagtttctaatttagaaagaatgggaataaagtctgcagaaaatttaattaaatct
atagaaagtagtaaaacaaagtcttggacaaaggtactatatggattgggtattcatcat
gtagggtacacaacagctatattgttaacagaaaatttttctagtgttcagcagctattg
caagcgccttatgatactttggtaactattaagggaatagggaaagaagttgcttattca
attagaagttggttctcgcttgaagaaaaccagaaattaataagcgaattagataaaaat
ggctttgttttagaaaataaaaatttagggatcaatcaaaataagccagataaacaaata
ttttttaatattactttcgtgattactggaagcttaaatactttaaaacgaagtgagatc
aaaaacttgatagagaattttggaggtaaagtagttaattcagtaactaaaaaaacaaat
tatattttagtaggggaaaatcctggttctaaattagcagaaggaatgaaattaaatatt
attcgtttaaatgaaacagattttctcagaatactaaaggatgcgaatattgaaattaac
gaaatttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (58)   

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