KEGG   Desulfofarcimen acetoxidans: Dtox_3040
Entry
Dtox_3040         CDS       T00986                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
dae  Desulfofarcimen acetoxidans
Brite
KEGG Orthology (KO) [BR:dae00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dae03016]
    Dtox_3040
Enzymes [BR:dae01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Dtox_3040
Transfer RNA biogenesis [BR:dae03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Dtox_3040
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 JAKMIP_CC3
Other DBs
NCBI-ProteinID: ACV63792
UniProt: C8W3K6
Position
complement(3236836..3237405)
AA seq 189 aa
MQPIRLFWAVNLSSELKAKIAVLQSQLKKCGADVKWVDEENFHLTVKFLGDTEPEIVPVM
VKKMKQEVGGLGVFTLRIEKLGVFPGKGLPKVIWAGVNGKKDKFRNLYDRTQRSLRTLGF
APDKKPLSPHLTLGRVRSARGTKELTAAMASFNSSNCFLGDEIIDSVDLMRSELTRNGAI
YTIMESIVL
NT seq 570 nt   +upstreamnt  +downstreamnt
atgcagcccatacgtttgttttgggcagttaatctctcttcggaactaaaggcaaagatt
gctgtgctgcagtcacagctaaagaagtgcggggcggatgttaagtgggttgacgaggag
aattttcatttaacggtaaagtttttgggcgacactgaaccggaaattgtaccggttatg
gttaaaaaaatgaagcaagaagtaggaggcctgggggtttttactttaagaatcgaaaaa
ttgggggttttccccggcaagggattgccaaaagtaatctgggccggagtgaacgggaaa
aaggataaatttaggaatttatatgaccggacgcagcggtctctccggactctgggcttt
gcgcccgataaaaagcctttgtcgccgcaccttaccctgggcagggtacgctcagcccgt
gggaccaaagagttaacggcagctatggcttcttttaacagcagtaattgttttttagga
gatgagattattgactctgttgaccttatgcggagcgagcttaccaggaatggagcaatt
tatactataatggaaagtattgtattgtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (25)   

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