KEGG   Desulfocurvibacter africanus subsp. africanus: Desaf_2073
Entry
Desaf_2073        CDS       T01662                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
daf  Desulfocurvibacter africanus subsp. africanus
Pathway
daf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:daf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Desaf_2073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:daf03019]
    Desaf_2073
   03016 Transfer RNA biogenesis [BR:daf03016]
    Desaf_2073
Enzymes [BR:daf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Desaf_2073
Messenger RNA biogenesis [BR:daf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Desaf_2073
Transfer RNA biogenesis [BR:daf03016]
 Prokaryotic type
  tRNA degradation factors
   Desaf_2073
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 TBPIP BLACT_WH
Other DBs
NCBI-ProteinID: EGJ50402
UniProt: F3Z3N0
Position
2311517..2313925
AA seq 802 aa
MSRPKRKSHQSAVDRETVLELFREARKPLSDKEILRNLGAQKQEKEALRHVLLDLAEEGR
VVQIGRGWGLADRMNMVSGRLEVQRSGVGFVISEDKRRRDIFVNPKDFNGAWHGDRVMVV
VTRDPGGTRRPEGRIARIIERSTQELAVRVQRRLHGTLWLCEPANPKLTISMVVDIDGEQ
PRPGDLLVARVGEQIDRNLWDGELLHRLGREDDVVVQEALVKLNNGVPTEFPAQVLAQAE
EMPTVPDPKEWGERRDMREVGFVTIDGAKARDFDDAVYVERRGRGYTLWVAIADVAHYVR
PGTSLDREAQERGNSYYFPQSVEPMFPEKLSNGLCSLNPDVPRLTMVAEIDFDAKGEPGR
TDFYAAVIQSHARLTYDQVNSAVLEKDEEERARIPHVLPMLDLSEELARKLNKQRKLRGS
LDFDLPEPEILFNLQGETMDIRPRVRNFAHQIIEEFMVSANEAVARFLSDRDRDFLYRIH
PEPNVDKIAALFELLMGTEIGHKVPEEASPKGLQSLLAAAQGKALEFMVNRLTLRTMMQA
KYSPDNVGHFGLASECYAHFTSPIRRYADLVLHRALKDELSLAGGARMSHDHLTEVGDHI
SARERVAMDAEREILKRVTILFLKDKVGQEFTGVINGMADFGFWVELREVMAEGMVRLST
ISDDYYAFFSERHMLVGERTGRIFRLGQAVKIRLMDVSLERLEVNMELAEGEQGAEAAEP
GVELPGTRKQRKKAVGQAVKTVRKEGRKTTMTTARKGEKPARPKSRQGEPAKAEGGAEAP
KAKRGARKPVRRPRFGRKKKEE
NT seq 2409 nt   +upstreamnt  +downstreamnt
atgagtagacccaaacgcaagtcccaccaatcggctgttgatcgcgaaacagtgctcgaa
ctctttcgcgaggcgcgcaagccgttgagcgacaaagaaatattgcgcaacctgggcgcg
cagaaacaggagaaagaggccttgcgccatgtgctgctggacctggccgaagagggccgc
gtggtgcagatcggcagaggctggggcttggccgatcgcatgaatatggtcagcggccgg
ctggaggtgcagcgttcgggcgtgggcttcgtcatctccgaggacaagcggcgtcgggat
attttcgtcaaccccaaggatttcaatggagcctggcatggcgaccgggtcatggtcgtg
gtcacgcgcgacccaggtggaacccgtcggcccgaaggccgcatcgcgcgcattatcgaa
cgctccacgcaggagctggccgtgcgcgtgcagcgccgcctgcacgggactctctggctg
tgcgagccggccaatcccaagctgaccatcagcatggtcgtggacatcgacggcgagcag
ccccggccgggcgacctgctcgtggcccgcgtgggcgagcagatcgaccgcaacctgtgg
gacggtgagctgctccatcgcctgggccgcgaggacgacgtggtcgtgcaggaggctctg
gtcaagctgaacaacggcgtgcccacggagtttccggcccaggtcctggcccaggccgag
gaaatgcccactgtgcctgaccccaaggaatggggcgagcgccgcgacatgcgcgaggtg
ggcttcgtgaccatcgatggtgccaaggcgcgcgacttcgacgacgccgtctatgtcgag
cgtcgcggcaggggctacaccctgtgggtggccatcgccgacgtggcccactatgtgcgg
cccggcacgtcgcttgaccgcgaggcccaggagcgcggcaactcctattatttcccgcag
tccgtggagcccatgtttccggaaaagctttccaacggcctgtgcagcctgaatccggac
gtgcccaggctgaccatggtggccgagatcgacttcgacgccaagggcgaacccggccgc
acggatttctatgccgcggtcatccagagccacgcccggctgacctacgatcaggtcaac
agcgccgtgctcgaaaaggacgaggaggagcgtgcgcgcatacctcatgtgctgcctatg
ctggatctgtccgaggaactggcccgcaagctcaacaagcagcgcaagctgcgcggcagt
cttgatttcgatctgcccgaacccgagattctgttcaatcttcagggcgagaccatggat
atccggccgcgcgtgcggaacttcgcccaccagatcatcgaggaattcatggtctcggcc
aacgaggccgtggcgcgtttcctgagcgatagggaccgcgatttcctgtaccgcatccac
cccgagccgaacgtggacaagatcgccgcgctcttcgaactgctcatgggcacggagatc
ggccacaaggtgccagaggaggcttcgcccaagggcctgcagagcctgctggccgcggcg
caaggcaaggccctggagttcatggtcaaccgcctgaccctgcgcaccatgatgcaggcc
aagtattcgccggacaacgtgggccacttcggtctggccagcgaatgctacgcgcacttc
acctcgcccatccgccgctatgccgaccttgtgctgcatcgtgcgctcaaggatgagctg
agtttggccggcggtgcgcgcatgagccacgatcacctgacagaggtcggcgaccatatc
agcgcccgcgagcgcgtggccatggacgccgaacgcgagatactcaagcgcgtgaccatc
ctgttcctgaaagacaaagtgggccaggagttcaccggcgtcataaacggcatggccgac
ttcggcttctgggtagagctgcgcgaggtcatggccgaaggcatggtgcggctgtccacc
atcagcgacgactactacgcatttttctccgagcggcacatgctcgtgggcgagcgcacg
ggtcgcatcttccggctgggtcaggccgtgaagatcaggctcatggacgtgagcctggag
cggcttgaggtcaacatggagttggccgaaggagagcagggcgcggaggccgccgagccc
ggagtcgagctgcccggcacgcgcaagcagcgcaagaaggcagtggggcaggcggtgaag
accgtgcgcaaggaaggccgcaagacgaccatgaccacggcgcgcaagggcgaaaagccg
gccagacccaagtccaggcagggcgagcccgcaaaggcggaaggcggcgcggaagcgccc
aaggccaagcgcggagcgcgcaagccggtcaggcggccgaggtttgggcggaagaagaag
gaggagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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