KEGG   Desulfatibacillum aliphaticivorans: Dalk_3638
Entry
Dalk_3638         CDS       T00813                                 
Name
(GenBank) Exoribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
dal  Desulfatibacillum aliphaticivorans
Brite
KEGG Orthology (KO) [BR:dal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dal03016]
    Dalk_3638
Enzymes [BR:dal01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Dalk_3638
Transfer RNA biogenesis [BR:dal03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Dalk_3638
SSDB
Motif
Pfam: RNB RNase_II_C_S1 Phage_sheath_1
Other DBs
NCBI-ProteinID: ACL05326
UniProt: B8FGU6
Position
complement(4604665..4606674)
AA seq 669 aa
MPVVMFVLNMELGTLIEYIDRKKVICAVIMQAKKQKVRLLTQANREVSVSEHRLFCVSGR
LDPEIGRDRLVDLLSETSARREALKAQVNVYDLWEVVHEEEQWIDAETMAGLAFGISPEP
DHVSAVIRAFFNDRVYFKFDVTRFLPHSPEKVEQIQIQEQEMARRAAVVQEGGEWLRRVY
GQESPEVPPDKEQFVSIMRSLYLFEKDSPTYDLGRQMVQAAGIDPNNGLFEFLIRLGVWD
EHANLDLYRMDVPIDFPREISQEANALANGSGFRTDTSQRRDFTGLPVLTIDGQATLDYD
DALSLEMDGDYFRVGIHISDVSHYVERGSLLDQEAFARSSSIYMPDDKIPMFPPLLAEGL
LSLKADQVRPAISVMVRLDRDAVVLDYEICPSLVRVRRQLTYHEVNMMADDDKEIIALSG
LAEKLREKRLDDGAVLISLPEINIWLDEEKNVTLHKVNRESRSRILVSEFMILANRLMAS
FLADHGSPAVFRAQPEPRLRLFDRDNGTLYQNWMQRRHLSRFILCPKPEPHSGLGVDAYV
TATSPIRKYFDLAVQRQIRGVLGLDKKYTQTEVENIIANSEVPLSKVSRVQFVRNRYWIL
KYLETKLGKTEPGMILERRKDRFVALLTDCLVECTLPVASDPSLAPQDAVQLRIVKVDPR
EQFLAVELA
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgcccgttgttatgttcgtgttaaacatggaacttggaaccttaatagaatatatcgac
cggaaaaaagtaatttgcgcggtcataatgcaggcgaaaaaacagaaggtgcggctactc
actcaggctaatcgcgaggtgagcgtgtctgagcatcgcctgttttgcgtgtccggacgc
ctggacccggagataggacgggaccgccttgtggacctgctgtccgaaacgtccgcccga
agagaggctcttaaggcccaagtgaacgtctatgacctgtgggaagtggtccatgaagag
gaacagtggatcgatgcagaaaccatggccggcttggctttcgggatttccccggagccg
gatcacgtctctgccgtcatccgggcttttttcaatgaccgggtgtatttcaagtttgat
gtcacccgttttttgccccacagcccggaaaaagtggagcagattcaaatccaggaacag
gagatggcgcgccgcgccgccgtggtccaggaggggggcgaatggctgcggcgggtttac
ggccaggaaagcccggaagtgcctcccgacaaagagcagttcgtctccataatgcggagc
ctttacctgtttgaaaaggacagccccacttacgacctgggcaggcaaatggtccaggca
gccgggattgatcccaacaacgggctgtttgaatttctcatccgcctgggagtctgggac
gagcacgccaacctggacctataccgcatggacgtccccatagacttcccccgggaaatc
tcccaggaagccaacgccctggccaacgggtccgggttccgaaccgacaccagccaaaga
agggacttcacggggctgcccgtgctgaccatagacggccaggccaccctggactacgac
gacgccctgagcctggaaatggacggcgactattttagggtgggcatccatatttccgac
gtctcccattatgtggaaaggggctcccttctggatcaagaggccttcgcccggtcaagc
tccatatatatgccggacgacaagatacccatgtttccgcctcttttggccgaaggcctc
ctaagcctgaaggccgaccaggtccggcccgccatcagcgtcatggtccgcctggatcgg
gacgccgtagtcctggactacgagatctgccccagcctggtccgggtgcgccgtcagctc
acctatcatgaagtaaatatgatggccgatgacgacaaggaaatcatcgccctgtccggt
ttggcggaaaaactccgggaaaaaaggctggacgacggcgcggtcctgatttccctgccg
gaaatcaacatctggctggatgaagagaaaaacgtaacccttcacaaagttaatcgggaa
agccgctccagaatcctggtttcggagttcatgatcctggccaatcgccttatggcctct
tttttggcggatcatggaagccccgcggtgtttcgggcccagcccgagccgcgcctccgt
ttgtttgaccgggataacggcaccctgtatcaaaattggatgcaaaggcggcacctttcc
cgcttcatcctttgccccaaacccgaaccccattcaggccttggcgtggacgcctatgtg
accgccacctcccccatacgcaagtattttgatctggcggtgcaaaggcaaatccggggt
gtattggggctggacaagaaatacacccaaacagaggtggagaacattatcgcgaattcc
gaagttcccctttccaaggtctcgcgggtccaatttgtgagaaaccgatactggatcctc
aaatacctggaaaccaagttggggaagaccgagccgggcatgattctggagcgcagaaag
gaccggtttgtggccttgcttaccgattgtctggtggagtgcacgctgcccgtcgcctcg
gatcccagcctggcgccgcaagatgccgttcagttgcggatcgtcaaggtggacccccgg
gagcaattccttgccgtggagttggcctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

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