KEGG   Pseudodesulfovibrio aespoeensis: Daes_2260
Entry
Daes_2260         CDS       T01382                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
das  Pseudodesulfovibrio aespoeensis
Pathway
das03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:das00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Daes_2260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:das03021]
    Daes_2260
   03400 DNA repair and recombination proteins [BR:das03400]
    Daes_2260
Enzymes [BR:das01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Daes_2260
Transcription machinery [BR:das03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Daes_2260
DNA repair and recombination proteins [BR:das03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Daes_2260
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RelB Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: ADU63266
UniProt: E6VTA7
Position
complement(2466909..2471012)
AA seq 1367 aa
MGQLRKKFGNIVNTLPIPHLLELQVDSYKRFLQLGTPPASRGDFGLESVFRSVFPIEDFN
KTASLDFVKYEIGEPKYDVDECISKGLTYETPIRITVRLVVFDVDEETDNRTIRDIKEQD
IYFGTLPLMTDKGTYVINGTERVIVNQLQRSPGIIFEHDSGKSHSSRKVLYSSRIIPMRG
SWLDFDFDHKDILYVRIDRRRKMPATILLKAMGLSRSDILEYYYDIESYTLLKSKVQRSV
VAEQFRKEIAFADIKDGDQILVAKGTPVTRGAWKKIVRAGVKSVEIDPDTLVGLFLAADI
VDKNGEVIAEAADELTQDMITRIREAGIKELNVLHTRGLDVSSSLRDTLLLDKTTDLETA
QIEIYRRLRPSSPPTPEIAANFFENLFRSADYYDLSSVGRYKLNSRLNQEVDLNIRTLTN
EDILLAVKELLRLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSLQ
EVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRER
AGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDYGFIETPYRMVRNKQVTSE
VHYMDASKEAKEVVAQANAPLDETGTFVNPRVNARISGDVQLTLAEEVTCMDISPSQTVS
ISAALIPFLEHDDANRALMGSNMMRQAVPLLQAEQPLVGTDMEGPVARDSGACVLAEEDG
VVHFVDAERVIVNYDNGIYGNSGGAKHYEFQKWHKSNQNSCFGQRPRVQVGQVIKKGDVL
ADGPGIEDGELALGKNLLVAFMPWCGFNFEDSILISERMVKEDVFTSIHIEEFELVARDT
KLGPEEVTRDISNVSEEMLRNLDECGIIRIGARIKPDDIMVGKITPKGETQLTPEEKLLR
AIFGDKARDVKNTSLKVPPGISGTIVDVKVFNRRSGDKDERTKAIEDAELAAFDAKEMKH
IASLTDATREKIWAAVKGETYKKDLAGNKKALLGKIGDVVDREAIDSVPVKKLLGIFDKD
PNEQIKMIMADYDQHIHFIKNLYDVKREKVTEGDDLPPGVIKMVKVYVAVKRKLSVGDKM
AGRHGNKGVVSSILPEEDMPFFEDGTPMDIVLNPLGVPSRMNIGQIMETHLGMAGRKLGE
QLNAMYEENAFKDMRKDVKGFFEDKDMDILIDSLSDEQLVEAIKKVRKGIVAKTPVFDGA
NEEEIWGWLEKAGLADDGKFILYDGRTGEPFHSRVTVGVMYILKLHHLVDEKIHARSTGP
YSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVQGRVKMYEKIVK
GDNFLEAGLPESFNVLVKELMSLGLDVTLHYEDRKRQSTAPQRPYIA
NT seq 4104 nt   +upstreamnt  +downstreamnt
atgggtcaactcagaaaaaaattcggtaacatcgtcaacacgcttcccatcccgcacctg
ctggagcttcaggttgattcctacaagcggtttctccagctgggcactccgcccgccagc
cgtggcgatttcggacttgagagcgtgttccggtccgtgtttcccattgaagatttcaac
aagaccgccagccttgatttcgtcaaatatgaaatcggtgagccaaaatacgacgtcgat
gagtgcatctccaagggtttgacctacgagacgcccattcgtataactgtccgtctcgta
gtttttgacgtggacgaagaaacggacaaccgcaccattcgcgacatcaaggaacaagac
atatacttcggcacgctgccgctgatgacggacaagggtacctatgtcatcaacggcacc
gagcgtgtcatcgtcaaccagttgcagcgctctcccggcatcatcttcgagcacgattcg
ggcaagtcccattccagccgcaaggtgctgtactcgagccgcatcatcccgatgcgcggc
tcctggctcgatttcgacttcgaccacaaggacatcctgtatgtccgcatcgaccgccgc
cgcaagatgcccgccaccatcctgctcaaggccatggggctgtcgcgctcggacattctc
gaatactactacgacatcgaatcatacaccctgctcaagagcaaggtgcagcgctccgtg
gtggctgagcagttccgcaaggaaatagcctttgccgacatcaaggacggcgatcagatc
ctggtggccaagggcacgcccgtcaccaggggcgcctggaagaagatcgtgcgcgcgggc
gtcaagtccgtcgagatcgatcccgacacccttgtgggcctgttcctggccgcagacatc
gttgacaagaacggcgaggtcatcgccgaggccgccgatgagctgacccaggacatgatc
accaggattcgcgaggccggaatcaaggaactgaacgtgctgcacacccgcggcctcgac
gtttcctcctccctgcgcgacaccctgctgctcgacaaaaccacagacctggagaccgcc
cagatcgagatatatcgccgtctgcggcccagttcgccgccgaccccggagatcgcggcc
aacttcttcgagaacctgttccgcagcgcggactactacgacctctccagcgtgggccgc
tacaagctcaactcgcgcctgaaccaggaggtggacctcaacatccgcaccctgaccaac
gaggacattctcctggccgtcaaggaactccttcgcctgaaggactcccatggcccggct
gacgatatcgaccacctgggcaaccgccgggtgcgccccgtgggcgagctggtggagaac
cagtaccgcatcggtcttgtgcgcatggagcgcgccatcaaggagcgcatgagcctccag
gaagtggccaccctcatgccccacgacctgatcaaccccaagccggtcgcggcagtgctc
aaggagttcttcggaacatcccagctcagccagttcatggatcagaccaacccgctctcc
gaggtcactcacaagcgccgtctgtccgccctgggacccggtggcctgacccgcgagcgc
gcgggctttgaggtgcgcgacgtgcacacctcgcactatggccgcatctgccccattgag
acgcccgaaggaccgaacatcggtctgatcgtctccctgaccacctacgccaaggtcaac
gactacggattcattgagacgccgtaccgcatggtcaggaacaagcaggtcacgagcgag
gtccattacatggacgcctccaaggaggccaaggaagtggtggcccaggccaacgcaccc
cttgacgagaccggcacctttgtcaacccgcgcgtcaacgcccgcatcagcggcgacgtg
cagctgaccctggccgaagaagtgacctgcatggacatcagcccgagccagacggtttcc
atctccgccgcgctgattcccttcctggagcatgacgacgccaaccgcgcgctcatgggc
tccaacatgatgcgtcaggccgtgcccctgctccaggctgagcagcccctggtcggcacc
gacatggaaggcccggtcgcccgcgactccggggcctgtgtcctggccgaagaggacggc
gtggtccacttcgtcgatgccgagcgcgtcatcgtcaactacgacaacgggatctacggc
aactcgggcggtgccaagcactacgagttccagaaatggcacaagtccaaccagaactcc
tgctttggccagcggcccagggtccaggtggggcaggtgatcaagaagggcgacgtgctc
gccgacggccccggcatcgaggacggcgaactcgccctgggcaagaacctgctcgtggcg
ttcatgccctggtgcggtttcaacttcgaggactccatcctcatctccgagcgcatggtc
aaggaggacgtcttcacctcgatccacatcgaggaattcgaactcgtcgcccgtgacacc
aagcttggacccgaggaagtgactcgtgacatctccaacgtttccgaggagatgctcagg
aaccttgacgagtgcggcatcatccgcatcggcgcgcgcatcaagcccgacgacatcatg
gtcggcaagatcacgcccaagggcgagacccagctgacgcctgaggaaaagctcctgcgc
gccatcttcggcgacaaggcgcgcgatgtgaagaacacgtccctcaaggtgccgccggga
atctccggcaccatcgtcgacgtaaaggtcttcaaccgccgctccggcgacaaggacgag
cgcaccaaggccatcgaggacgccgagctggcggcctttgacgccaaggaaatgaaacac
attgcgtccctgaccgacgccacccgggagaagatctgggccgcggtcaagggcgagaca
tacaagaaggatctggccgggaacaagaaggccctgctcggcaagatcggcgacgtggtg
gaccgcgaggccatcgactctgtgccggtcaagaagctgctgggcatctttgacaaggat
cccaacgagcagatcaagatgatcatggccgactatgatcagcacattcacttcatcaag
aacctctacgacgtgaagcgcgagaaggtgaccgagggcgacgacctgccgcccggcgtc
atcaagatggtcaaggtctacgtggccgtgaagcgcaagctcagcgtgggcgacaagatg
gccggacgccatggcaacaagggtgttgtctcgtccatcctgcccgaagaggacatgccg
ttcttcgaggacggcacgcccatggacatcgtgctcaacccccttggcgttccctcccgt
atgaacatcgggcagatcatggaaacgcacctgggcatggcgggccgcaagctcggcgag
cagctcaatgccatgtacgaggagaacgccttcaaggacatgcgcaaggatgtcaagggc
ttcttcgaggacaaggacatggacatcctcatcgattccctgtctgacgagcagcttgtg
gaggccatcaagaaggtcaggaagggcatcgtcgccaagaccccggtctttgacggcgcc
aacgaggaagagatctggggctggctggagaaggccggactcgccgacgacggcaagttc
atcctgtatgatggccgcaccggcgaacccttccacagccgtgtcactgtgggtgtcatg
tacatcctcaagctgcaccacctggtcgacgagaagatccacgcccggtccaccggccct
tactccctggtcacgcagcagcccctgggcggcaaggcccagtttggcggccagcgcctg
ggcgagatggaagtctgggccctggaggcctacggagccgcctatcttctgcaggagttc
ctcaccgtcaagtccgacgatgtgcagggccgcgtgaagatgtacgagaagatcgtcaag
ggcgacaacttcctggaagccggcctgccggaatccttcaacgtcctggtcaaggaactc
atgtcgctgggtctggatgtgaccctgcactatgaggaccgcaagcgtcagtccactgcc
ccgcagcggccctacatcgcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (49)   

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