KEGG   Desulforapulum autotrophicum: HRM2_00020
Entry
HRM2_00020        CDS       T00861                                 
Symbol
gyrB
Name
(GenBank) GyrB
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
dat  Desulforapulum autotrophicum
Brite
KEGG Orthology (KO) [BR:dat00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dat03032]
    HRM2_00020 (gyrB)
   03400 DNA repair and recombination proteins [BR:dat03400]
    HRM2_00020 (gyrB)
Enzymes [BR:dat01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     HRM2_00020 (gyrB)
DNA replication proteins [BR:dat03032]
 Prokaryotic type
  DNA Topoisomerases
   HRM2_00020 (gyrB)
DNA repair and recombination proteins [BR:dat03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HRM2_00020 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 Toprim_4 SpoIIE GyrB_hook
Other DBs
NCBI-ProteinID: ACN13125
UniProt: C0QD87
Position
1130..3556
AA seq 808 aa
MKNNDNVKDYGANNIKILEGLEAVRKRPSMYIGNVGIEGLHHLVYEVVDNSIDEAMAGHC
DKIIVIIHPDQSVSVEDNGRGIPVGMHETEHIPAAEVVMTKLHAGGKFDKDSYKVSGGLH
GVGISVVNALSINLEMEVFKDGKVYFQRYSRGVKQTELEITGDTDKSGTRILFKPDFDIM
NENEFEYEKLSRRMRELAFLNKGIRIIIEDELSAEKDDFHYEGGLLSFVEYLNRNFTAMH
EPIHIEGEKSDVSVDVAIQYNDTFKEKIYSFANNINTIEGGTHLSGFKGALTRTLNNYAS
SGNLPKNMQNIKIGGDDVREGLTAIVSVKVMDPQFEGQTKTKLGNSEVKGIVESLINERL
AMFLEENPNTAKKIIMKAVDAARARDAAKRARELARKKGTLLDSTLPGKLAECQYADPKE
RELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKILRSDEIKNVFTVLGTG
AGKEEYDIEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPDLISNGYLYIAQPPLFRI
GKGKSGIYLKDEPEYRDYLLKRICEQKEVRLADSEEPLPEESLFAFLKDLISFHNAVDRL
TMREMDTKLLMFLIGEGVKDKFFLEDLERMTSLKETLTAKGYIIRDITFDEERNLYEMDI
LGNEHDREKGIKHSLVTVGRSLIAMGDYTIMHKVLNKIESMDLPPFNVCAKSSSDKVVSF
EDRTEFFNYIMAEAKKGIAIQRYKGLGEMNPDQLWETTMDPEKRVMLQVNIEDAEKADEI
FTLLMGEEVEPRRNFIQTNALEVSSLDF
NT seq 2427 nt   +upstreamnt  +downstreamnt
atgaaaaacaacgacaatgtaaaagattatggtgcaaacaatataaaaattcttgaaggt
cttgaagccgtcagaaaaagaccttccatgtatattggaaacgtggggatagaaggcctg
catcacttggtttatgaggtggtggacaacagtattgacgaggccatggcgggtcactgt
gataaaataatcgtcatcatccatccagatcagagcgtcagtgtcgaggacaacggccgt
ggtattcccgttggcatgcatgaaacggaacatataccggcagctgaagtggtcatgaca
aaactccatgccggcggtaaatttgacaaggattcctacaaggtatccgggggacttcac
ggggtgggaatctccgttgtgaatgccctttccattaatttagagatggaagtgttcaag
gacggcaaggtttacttccagcggtattccaggggtgtcaaacagactgaacttgagatc
acaggtgatacggataaaagcggaacacgaatcctgttcaaacctgattttgatattatg
aacgaaaatgagtttgaatacgaaaagttatcccggcggatgagggagcttgcattcctg
aacaaggggattcgcatcatcattgaggatgaactttccgctgaaaaggatgattttcac
tatgaaggcggacttctatcgtttgttgaatatttgaaccgtaattttaccgccatgcat
gaacccattcatattgaaggagaaaagagtgatgtcagcgtggatgtcgccattcagtac
aacgacacattcaaggaaaaaatatattcttttgccaacaatataaacaccattgagggc
ggaacccatctgtctggattcaagggcgcacttacccgtacgctgaacaattatgcaagc
tctggaaatcttccaaaaaatatgcagaatatcaagatcggtggtgatgatgtaagggaa
gggcttacggccattgtcagcgtcaaggtaatggatccccagtttgaaggtcagacaaag
acaaagcttggcaatagcgaggtcaagggaatagtagagtcccttatcaatgaacgcctt
gccatgtttcttgaggaaaatcccaacacggctaaaaaaataatcatgaaggccgttgat
gcggcaagggcaagggatgccgccaagagggcaagggagcttgcacggaaaaagggcacc
ctgcttgattcaacccttccgggaaaacttgccgaatgccagtacgcagatcccaaagag
agggaactctttcttgtggagggagattcagcaggcggtagtgccaagcagggaagggac
agacggttccaggccatccttcccctgaagggaaaaatattaaacgttgaaaaggcgcgg
tttgacaaaattttaagaagtgatgagattaaaaatgtctttaccgttcttggtacaggg
gctggaaaagaggagtatgatatagaaaagatccgttaccacaagatcgtcatcatgacc
gatgccgatgtggatgggtcccatatcagaaccctgctgctcacctttttctttcgccag
atgcccgatctgatcagcaacggatatctgtatattgcccagccgcctctttttcgaata
ggtaagggtaaaagcggcatctatctcaaggatgagcctgagtacagggattatcttcta
aaaaggatatgtgaacaaaaggaagttcgcctggcagacagcgaagagcccctgccagaa
gagagtctctttgcctttttaaaggatttgatctcgttccacaatgccgttgaccggctc
accatgcgtgaaatggatacaaaacttttaatgttcctgatcggtgagggggtaaaggat
aaattctttcttgaggaccttgaacgtatgacatccctcaaggagaccctgaccgccaag
ggatatatcatccgtgatatcacatttgacgaagaaagaaacctgtatgaaatggatatc
cttggcaacgagcatgaccgggaaaagggtataaagcacagccttgtcacggttggccgc
agcctgatcgccatgggcgattatacgatcatgcacaaggtgctaaacaagatagaatcc
atggacctgccgccgttcaatgtgtgtgccaaatcttccagtgacaaggtggtctctttt
gaagacaggactgaatttttcaactatattatggctgaggccaagaaagggatagccatc
caacgatacaagggtcttggtgagatgaacccggatcagctgtgggaaaccacaatggat
cctgaaaaaagggtgatgctccaggtcaatattgaagatgcggaaaaagccgatgaaatt
tttaccctgcttatgggtgaagaggtggagccccggagaaattttattcagaccaatgcc
cttgaggtttcgtccctggatttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system