KEGG   Desulforapulum autotrophicum: HRM2_42570
Entry
HRM2_42570        CDS       T00861                                 
Symbol
pcrA2
Name
(GenBank) PcrA2
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
dat  Desulforapulum autotrophicum
Pathway
dat03420  Nucleotide excision repair
dat03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HRM2_42570 (pcrA2)
   03430 Mismatch repair
    HRM2_42570 (pcrA2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dat03400]
    HRM2_42570 (pcrA2)
Enzymes [BR:dat01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HRM2_42570 (pcrA2)
DNA repair and recombination proteins [BR:dat03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HRM2_42570 (pcrA2)
   MMR (mismatch excision repair)
    Other MMR factors
     HRM2_42570 (pcrA2)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 AAA_11
Other DBs
NCBI-ProteinID: ACN17313
UniProt: C0QD81
Position
complement(4767264..4770737)
AA seq 1157 aa
MEFIADLHLHSHFSRATAKNLDLEHLYQAAQLKGVTLVGTGDFTHPGWVSELKEKLEPCE
PGLYRLKKSIAKELDHAIPKLCRGKVRFVLQCEISSIYKRQDRVRKNHNLVYLPDLETVE
RFNATLDRIGNLKSDGRPILGLDAQRLLEIVLDTSDAAFLIPAHIWTPWFSMFGSKSGFD
SIKGCFGDLSNHIFAVETGLSSDPPMNWRIKDLDALTLISNSDAHSPMFLGRNASRFNSD
LSFAAVKRALAQQDDTFVGTIDMFPQEGKYHYDGHRKCNVCLDPGQTADKGGICPQCGKP
LTLGVLYRVHELASRPAGYNPGNRRPFQSIIPLADILSEIFDVGPKTKKVGIHYDLALKR
LGPELDILLTKPVSEVEAAGIPLLGEAVRRMRAGKVSISPGFDGEYGRVKIFGPEEKQRL
RGELEMFAPVRRVSLKPVKKKDPDPLKTPGCLETLEDLNAKAVLNPTQRLDPCGLPGGDP
EHRASPVASESMDIVESLNPEQRLAVKGQGVPLLIEAGPGTGKTRTLTARIAWLIRDQGV
APGTILALTFTNRAAGEMQERLNTLLPGQQGSVWAGTFHRFCLMVLKEYAGFKGFIVDDP
ARKEMLNQAVAHADVALSSALLDRTISMAKQHCLGPEDDLTKIAPPGLDKQDLVRVARVW
QVYQEHLAALDLVDFDDLIAMVINLFNTDSALVATIRGRFAHILVDEYQDVNKGQYLLIG
QLAGNGRGLVVIGDPDQSIYGFRGSDNRYFQQFQADYPGAEKIVLQRNYRSTEAILRASF
QLLTHGNQEGVSQKVFSDIRGRERLVIIEATSDRAEAVVVGKRIETLVGGLSMFSMDAGK
VGSTQENEFSFADVAVLYRTRRQGKIFADVFQQAGIPFQMADKESLLNHPGIGELVSLLR
LLKGGATFQDLFLVFNHFKAGAGKGTRQKLGQWFRESELSPAGAVELLGAAPFVHVRKDI
AETLLGVARKIMALGQTVQGLGACDCLDLLASKADLYPLIKSDETSCRVFDRLLGDARNR
DDDISCFLESLSLENDSESLWPSAEKVTLMTMHGAKGLEYPVVFVTGCEPGLIPFAFPGR
EPEDIDEERRLFYVAMTRARDILCLTYSTKRRIYGITRQTGPSTFLLDIEAALKEHNHNR
YQGKKKKPCEKQLDLFQ
NT seq 3474 nt   +upstreamnt  +downstreamnt
atggaatttatagcggatcttcacctgcactcccatttttcaagggcaacggccaagaac
cttgaccttgaacacctttaccaggcagcccagctcaagggagtgacccttgttggcacc
ggggattttacccatccgggctgggtctctgaactcaaggaaaagcttgagccctgtgaa
cccgggctttatcgccttaaaaagagcattgcgaaagaacttgaccatgccattccaaaa
ttgtgcaggggtaaggttcggtttgttctccagtgtgaaatcagcagtatctataagcga
caggaccgggtgaggaaaaaccataatctcgtctacctgccggatcttgaaaccgttgag
cggtttaatgccacccttgacagaattggcaacctgaaatccgatggccggccgatcctt
ggccttgatgcccagcgactgctcgaaattgtgctcgacacctcggatgcagcgtttttg
ataccggcccacatctggactccatggttttccatgttcgggtcaaaatcgggattcgat
tccatcaaagggtgctttggtgacctttcaaaccatatctttgccgttgaaacgggcctt
tcatccgatccgcccatgaactggcggatcaaagatcttgatgccctcaccctgatttca
aactccgatgcccattctcccatgtttcttggccggaacgcctccaggtttaactccgat
ctttcgtttgccgcggtcaaaagggcccttgcacaacaggatgacacctttgttggaacc
attgacatgtttccccaggagggcaaatatcactatgacggacacagaaagtgcaatgtc
tgcctggacccgggtcagaccgcagacaaagggggtatttgcccccaatgcggcaaaccc
cttaccctgggagtactctaccgggttcatgaacttgcctcaaggcctgcgggctacaat
ccgggcaaccgccgtccctttcaaagtattatcccccttgccgacattctttctgagatc
tttgatgtggggcctaaaaccaaaaaagtcggcattcattatgatcttgccttgaaacga
ctgggtccagagcttgatatccttttaaccaaacctgtttcggaggttgaggcggccggt
atccccctgctgggagaggctgttcgcaggatgagagccggcaaggtttccatctctccc
gggtttgacggcgagtatggccgggtcaagatttttgggcccgaagaaaaacagcggctc
aggggggaacttgagatgtttgccccggttcggagggtttcgttaaaacctgtgaaaaaa
aaggacccagatccccttaaaacgccaggttgccttgaaacgctggaggatcttaacgct
aaagcggttctcaatccaacacagcgccttgatccctgtggtttgcccgggggcgaccct
gaacatcgggcaagccctgttgcgtcggagtccatggacattgtggaatccctgaatccg
gaacaacgccttgccgtaaagggccagggtgttccccttctcattgaggcagggcctgga
acgggcaagacaagaaccttgacggcaaggatcgcctggctcatccgggaccagggcgtg
gcccccggaaccatcctggccctcacctttaccaatcgggccgcaggcgagatgcaggag
cggctcaacacccttttacccggtcaacaaggatcggtatgggccgggacctttcatcgg
ttctgtctcatggtgctcaaggagtacgcaggttttaaggggtttatcgtggatgacccg
gcaagaaaagagatgctcaatcaggctgttgcccatgcagatgttgcgttgtcttctgcc
cttttggaccggaccatttccatggcaaaacaacactgccttgggccggaagatgatctt
acaaagattgcaccgccaggcctggacaaacaggatttagtccgtgtcgcaagggtgtgg
caggtttaccaggaacaccttgcagccctggatctggttgactttgacgatctgatcgcc
atggtgatcaatctttttaacaccgattcagcccttgtggcaaccatccgcggtcggttc
gcccatattcttgttgatgaataccaggatgtgaacaagggccaatatcttctgatcggg
cagctggcaggaaacggcaggggccttgttgtgatcggtgatccagaccagtccatctat
ggctttcgagggtcggacaaccggtattttcaacagttccaagcggattatccaggtgct
gaaaaaattgttctacagcgaaactaccgttccacagaggctattctcagggcttcgttt
cagctgctcacccatggtaatcaggaaggcgtttcccaaaaggtcttttcagatatcagg
ggaagggagcgccttgttattatagaggccacctctgaccgggccgaggccgttgttgtg
ggtaaaaggattgaaacccttgtgggcggactttcgatgttttccatggatgccggtaag
gtgggttcaactcaggaaaatgagttttcatttgccgatgttgccgtgctctatcgcacc
cgtcgccagggaaaaatttttgccgatgtgtttcaacaggctggtattccctttcagatg
gcggacaaggagagccttctgaatcatcccggcattggtgaacttgtctcactgttaaga
cttctcaaggggggtgcgacctttcaggatctttttctggtgtttaaccatttcaaggcc
ggtgccggcaaagggacaaggcagaaacttggtcaatggttccgggagtctgaactttct
ccggccggggcggttgaacttcttggggcagcaccctttgtccatgtccggaaagatatt
gcagaaacccttttgggtgttgcccggaaaataatggcattgggtcaaacggtccaggga
cttggcgcctgtgactgccttgatcttctggccagtaaggccgatctttacccgttgatt
aaatcggatgaaaccagctgccgggtctttgaccggcttcttggggatgcaaggaacagg
gacgatgatatctcctgtttccttgagtccctgagcctggaaaacgacagcgaaagccta
tggcccagtgctgaaaaggtgacgctcatgaccatgcacggggcaaaggggcttgaatat
cccgtggtctttgtaacagggtgtgaaccgggtttgattccctttgcctttccgggccga
gagcctgaagatattgacgaggaacgacggctcttttatgtggccatgacccgggccagg
gacattctgtgtttgacatattcaacaaaaagaaggatatacggcatcaccagacagacc
gggccttcaacgttccttttggacattgaagcggccctcaaggagcataaccacaacaga
taccagggtaaaaagaaaaagccctgtgaaaagcagctggatctgtttcaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (40)   

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