KEGG   Dermacoccus abyssi: FV141_03135
Entry
FV141_03135       CDS       T06197                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
day  Dermacoccus abyssi
Pathway
day03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:day00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FV141_03135 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:day03021]
    FV141_03135 (rpoB)
   03400 DNA repair and recombination proteins [BR:day03400]
    FV141_03135 (rpoB)
Enzymes [BR:day01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FV141_03135 (rpoB)
Transcription machinery [BR:day03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FV141_03135 (rpoB)
DNA repair and recombination proteins [BR:day03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FV141_03135 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: QEH92643
Position
654210..657695
AA seq 1161 aa
MAASRTATQTLSSAKTASGRLTFAKIREPLEIPDLLALQTESFDWLLGNEKWQARVAAAK
AEGRVDVPERSGLEEIFEEISPIEDFSGSMSLSFRDHRFEDVKYSIDECKERDMTYAAPL
FVTAEFMNAETGEIKSQTVFMGDFPLMTDRGTFVINGTERVVVSQLVRSPGVYFERSIDK
TSDKEIYTAKVIPSRGAWLEFEVDKRDMVGVRVDRKRKQSVTVLLKALGWTEAQILEEFG
QYESMRATLEKDHTADQDAALLEIYRKLRPGEPPTREAAQQLLDNLYFNGKRYDLAKVGR
YKVNKKLGVDGGLEDSTLSVDDVVATIKYIVALHAGEDTMKGKRHGEDVDVRVEVDDIDH
FGNRRLRNVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASYGRINPFGFVETPYRKVENGKVSDEVVYLSADEEDTYVIAQANAPLTQDN
EFVEDRVMARTKGGEASDVARDEVDFMDVSARQMVSAATALIPFLEHDDANRALMGANMQ
RQAVPLVRSEAPLVGTGIEYRAALDSGDVVRATKAGVVQQVSADLVTVANDDATYSTYRI
AKFTRSNQGTCYNQRVVVTEGERLEEGAVIADGPATDGGEMSLGKNLLVAFMPWEGYNYE
DAIILSQRLVQDDTLSSIHIEEHEIDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRI
GAEVRDGDLLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGTVIGVKV
FDREEGDELPPGVNQLVRVYVANKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTP
VDVVLNPLGVPSRMNPGQVLELHMGWAASRGWDIEGTPEWAAKIPEDARQADANTRIATP
VFDGAREAEIRGLLDSTNKTRDGVRLIDNSGKAQLFDGRSGEPFPDPVSVGYMYILKLHH
LVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGTAIDLRDSEQEVF
RAAEELGIDLSRREPSSVEEV
NT seq 3486 nt   +upstreamnt  +downstreamnt
ttggctgcctcgcgcaccgcgacccagactctgtcctcggcgaagactgcctccggccgt
ctcaccttcgccaaaattcgtgagcccctcgaaatcccggatctgctcgcgttgcagacc
gagagcttcgactggctcctcggcaacgagaagtggcaggcccgcgtggccgccgccaag
gccgagggccgtgtcgacgttcccgagcgctccggtctcgaggagatcttcgaggagatc
tccccgatcgaagacttctccggctccatgtcgctgagcttccgtgaccaccgcttcgag
gacgtcaagtactcgatcgacgagtgcaaggagcgcgacatgacgtacgcggctcccctc
ttcgtcaccgccgagttcatgaacgccgagaccggcgagatcaagagccagacggtcttc
atgggtgacttcccgctcatgaccgaccgcggcaccttcgtcatcaacggcaccgagcgt
gtcgtggtctcgcagctcgtgcgcagccccggcgtgtacttcgagcgcagcatcgacaag
acctccgacaaggagatctacacggcgaaggtcatcccgagccgcggcgcctggctcgag
ttcgaggtcgacaagcgcgacatggtcggcgttcgcgtcgaccgcaagcgcaagcagtcc
gtcaccgtcctgctcaaggccctcggttggaccgaggctcagatcctcgaggagttcggc
cagtacgagtcgatgcgcgccaccctggagaaggaccacacggccgaccaggacgccgcg
ctgctcgagatctaccgcaagctgcgtccgggcgaaccgccgacgcgtgaggccgctcag
cagctgctcgacaacctgtacttcaacggcaagcgttacgacctcgcgaaggtcggccgc
tacaaggtcaacaagaagctcggtgtcgacggcggcctcgaggactcgacgctgtcggtc
gacgacgtcgtggccaccatcaagtacatcgtcgcgctgcacgccggcgaggacacgatg
aagggcaagcgtcacggcgaggacgtcgacgtgcgtgtcgaggtcgatgacatcgaccac
ttcggcaaccgtcgcctccgcaacgtcggtgagctcatccagaaccaggtccgcacgggt
ctttcccgtatggagcgcgtggttcgtgagcgcatgacgacgcaggacgtcgaggccatc
acgccgcagaccctgatcaacatccgcccggtcgtggcgtcgatcaaggagttcttcggc
acctcgcagctgtcgcagttcatggaccagaacaacccgctcgccggtctgacgcacaag
cgtcgtctctccgcgctgggcccgggtggtctctcccgtgaccgcgccggcatggaggtc
cgtgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacgccggaaggcccg
aacatcggcctcatcggttcgctcgcgtcgtacggtcgcatcaacccgttcggatttgtc
gagaccccgtaccgcaaggtcgagaacggcaaggtctccgacgaggtcgtctacctgtcc
gccgacgaggaggacacctacgtcatcgcgcaggccaacgccccgctgacgcaggacaac
gagttcgtcgaggatcgcgtcatggcccgcaccaagggcggcgaggcgagcgacgtcgcg
cgcgacgaggtcgacttcatggacgtgtccgcacgtcagatggtctcggccgccaccgcg
ctcatcccgttcctcgagcacgacgacgccaaccgcgccctcatgggtgccaacatgcag
cgtcaggccgtgccgctcgtgcgctcggaggccccgctcgtgggtaccggcatcgagtac
cgcgcggcactcgactcgggtgacgtcgtgcgtgcgacgaaggccggtgtcgtgcagcag
gtctccgccgacctcgtgaccgtcgccaacgacgacgccacgtacagcacctaccgcatc
gcgaagttcacgcgttcgaaccagggcacctgctacaaccagcgtgtcgtggtcaccgag
ggtgagcgtctcgaggaaggcgctgtcatcgccgacggtcccgcgaccgacggtggcgag
atgtcgctcggtaagaacctgctcgtggcgttcatgccgtgggagggctacaactacgag
gacgccatcatcctcagccagcgtctcgtccaggacgacacgctctcctcgatccacatc
gaggagcacgagatcgacgctcgtgacacgaagctcggcccggaggagatcacgcgggac
atcccgaacgtctccgaagaggtcctggccgacctcgacgagcgcggcatcatccgcatc
ggtgccgaggtccgcgacggcgacctgctcgtcggcaaggtcacgcccaagggtgagacc
gagctgacgccggaggagcgcctcctgcgcgccatcttcggtgagaaggcccgcgaggtc
cgtgacacgtccatgaaggtcccgcacggcgagaccggcacggtcatcggcgtcaaggtc
ttcgaccgcgaggagggcgacgagcttcccccgggcgtcaaccagctcgtgcgtgtgtac
gtcgcgaacaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaag
ggcgtcatctcgaagatcctgccggtcgaggacatgccgttcctcgaggacggcacgccg
gtcgacgtggtgctcaacccgctcggtgttccgtcccgaatgaacccgggtcaggtcctc
gagctgcacatgggctgggccgcatcgcgtggttgggacatcgaaggcaccccggagtgg
gccgccaagatccccgaggatgcgcgtcaggccgacgccaacacgcgtatcgccaccccg
gtgttcgacggtgcgcgagaggccgagatccgcggtctgctcgactcgacgaacaagacc
cgtgacggcgtgcgtctcatcgacaactccggtaaggcgcagctgttcgacggtcgttcc
ggcgagccgttcccggacccggtgtcggtgggctacatgtacatcctcaagctccaccac
ctggtggacgagaagatccacgcccgttcgaccggcccgtactcgatgatcacccagcag
ccgctcggtggtaaggcgcagttcggtggtcagcgattcggcgagatggaggtgtgggcc
ctggaggcgtacggcgccgcctacgcgctgcaggagctgctcaccatcaagtcggacgac
gtcaccggccgcgtcaaggtgtacgaggccatcgtcaagggcgagaacatccccgagccc
ggcattccggaatcgttcaaggttctcatcaaggaaatgcagtcgctctgcctcaacgtt
gaggtcctcagcagcgacggcacggcgatcgaccttcgcgactcggagcaggaagtcttc
cgcgctgccgaggagctgggtatcgacctgtcgcgccgcgagccgagcagcgtcgaggaa
gtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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