KEGG   Desulfomicrobium baculatum: Dbac_2078
Entry
Dbac_2078         CDS       T00963                                 
Name
(GenBank) DNA ligase (NAD(+))
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dba  Desulfomicrobium baculatum
Pathway
dba03030  DNA replication
dba03410  Base excision repair
dba03420  Nucleotide excision repair
dba03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Dbac_2078
   03410 Base excision repair
    Dbac_2078
   03420 Nucleotide excision repair
    Dbac_2078
   03430 Mismatch repair
    Dbac_2078
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dba03032]
    Dbac_2078
   03400 DNA repair and recombination proteins [BR:dba03400]
    Dbac_2078
Enzymes [BR:dba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Dbac_2078
DNA replication proteins [BR:dba03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Dbac_2078
DNA repair and recombination proteins [BR:dba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Dbac_2078
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Dbac_2078
   MMR (mismatch excision repair)
    DNA ligase
     Dbac_2078
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Dbac_2078
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_5 HHH_2 PTCB-BRCT DNA_ligase_ZBD RlmA_N zf-tcix
Other DBs
NCBI-ProteinID: ACU90163
UniProt: C7LNT9
Position
complement(2383449..2385296)
AA seq 615 aa
MTLPLDLPSEAHRLVERLAEYNDAYRRGAPLVGDAQYDLLLARLRELDPDHPFLHRVEPE
TFSGKREIRHPVPMLSTDKAYTSEELERFVARVEKEAGEIGVSEVRYRVTPKLDGLAGRD
DGTFFVTRGNGESGYEVSSAFAKGMIPLGGRGRGVGEMVILQSYFQEHLSDAFEHPRNLV
VGIVSSDTVNELAKKALADEAVRFVPYAELPSWEGSGAELLQRMDALTEELSAQVDYPLD
GMVVEVVDEDVRRTMGATSHHYRWQIAVKRKGETALTVVTGVVWQVGRTGKVTPVLMVEP
VNVSGATIRRVTAHNAGLLEKKGLGPGAEIEIIRSGEVIPKVEAVLVPAATTLPTACPSC
GAALERENDFLLCRNEHCPDQVVQTIEHWFKTLGNADWFGRKTVEKMVRSGYDSLEKVYE
LGEDDFRAMGFGPVLSGNLAEAVYLSRTREVEDWRFLAALGIEDLGKGDSRKLLEQFRLQ
DLLTVSRERIEAVHGFGAITAASIARGLERVGPTLRHLLDLGFRIMPTGAAREKVTDSPL
AGKHVVFTGKMRGSREDMQEEARAQGALVQSAVNSKTDFLICGENVGASKLAKARQFGTA
ILQEDEYLRLIGAVG
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgaccctgccgctggaccttccttccgaggcccaccggctggtcgagcgcctggccgaa
tacaacgatgcctaccgccggggcgcgcccctggtcggcgacgcccagtacgacctgctg
ctcgcgcggctgcgcgagctcgacccggatcacccgtttctgcaccgggtcgagcccgag
accttttccggcaagcgcgaaatccgccatcccgtgcccatgctctccaccgacaaggcc
tatacgtccgaagaactggagcgctttgtggcccgcgtggaaaaagaggccggggagatc
ggcgtcagcgaggtgcgctaccgggtcacgcccaagctcgacggactggccgggcgcgac
gacgggactttttttgtcacgcgcggcaacggcgagagcggctacgaggtcagctcggcc
tttgccaagggcatgatcccgctcggcggccggggccggggcgtgggcgagatggtcatc
ctgcagagctattttcaggagcacctctccgacgccttcgagcatccgcgcaatctggtg
gtgggcatcgtgtcctcggacacggtcaacgaactggccaaaaaagccctggccgacgaa
gccgtgcgttttgtgccctacgccgagctgccgagttgggaagggagcggggcggagctg
ctgcagcgcatggatgcgctgacggaggagctttcggcgcaagtggactatcccctggac
gggatggtggtggaggtggtggacgaggacgtgcgccggaccatgggcgccaccagccat
cactaccgctggcagatcgcggtcaagcgcaagggcgagacggccctgaccgtggtgaca
ggcgtggtctggcaggtcggccgcaccggcaaggtcaccccggtgctcatggtcgaaccc
gtgaacgtgtcgggagcgaccattcgccgggttacggcgcacaatgccggtctgctggag
aagaaggggctgggtccgggcgcggagatcgagatcatccgcagcggcgaggtcattccc
aaggtcgaggcggtgctggtcccggccgcgaccacgctgcccacggcctgtccgtcctgc
ggggcggctcttgaacgcgagaacgattttctgctctgccgcaacgaacactgcccggat
caggtcgtgcagaccatcgagcactggttcaagaccctcggcaacgccgattggttcgga
cgcaaaaccgtggaaaagatggtccgttcaggttatgacagccttgaaaaggtgtacgag
ctgggcgaggatgattttcgggccatgggtttcggccccgtgctgtccggcaatctggcc
gaggccgtgtacctgagccgcacccgcgaggtcgaggactggcgttttctggccgccctt
ggcattgaggatctgggcaagggcgacagccgcaagctcctggagcagtttcgtctccag
gatctcttgaccgtcagccgggagcggatcgaggccgttcatggcttcggcgccatcact
gcggcctccatcgccagggggcttgagcgagtgggtccgaccctgcgccacctgctggac
ctgggttttcgcatcatgcccaccggcgcggcccgcgaaaaggtcacggacagtcccctg
gccggaaagcacgtggtcttcaccggcaagatgcgcggctcgcgcgaggacatgcaggaa
gaggcccgcgcccagggagcattggtgcagagcgcggtcaattccaaaaccgattttctg
atctgcggcgaaaacgttggcgcgagcaagctcgccaaggcccggcaattcgggacggcc
atcctgcaggaagatgaatatctgcgcctcatcggcgcggtagggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (92)   

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