KEGG   Desulfotomaculum nigrificans: Desca_0205
Entry
Desca_0205        CDS       T01498                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
dca  Desulfotomaculum nigrificans
Pathway
dca03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Desca_0205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dca03021]
    Desca_0205
   03400 DNA repair and recombination proteins [BR:dca03400]
    Desca_0205
Enzymes [BR:dca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Desca_0205
Transcription machinery [BR:dca03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Desca_0205
DNA repair and recombination proteins [BR:dca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Desca_0205
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: AEF93109
UniProt: F6B5N6
Position
224406..227918
AA seq 1170 aa
MLELNNFDSIRIGLASPDKIRQWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVIEPGDTPLLKKQLLTETEYREYKDKFGNSFKAAMGAEAIKKLLE
EIDLDELARELRQELKDVSGQRKIRAIRRLEVVEAFRKSGNRPEWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKE
MALELFKPFVMKKLVNDGYAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAANNIL
NPKDGKPVASPTQDMVLGCYYLTIERDGDLGEGSVFKDEDEAILAYYNKAVSLHAKVQVR
INGKRIDTTVGRVIFNQVIPKELGYINTVCDKKQLSKIVNDCYRKLGNASTAELLDGIKE
LGYRFSTQAGITIGVADITIPKEKKEILAQADEQVNKIETQFRRGLITEDERYRKVIAVW
NDATDKVTKALMGALDKFNNVYMMATSGARGNIQQIRQLAGMRGLMADPSGRIIDLPIKA
NFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTTEGIE
VTEVRDGTETIEKLADRLDGRVPMEPVVHPETGEVIISQEQVDRREMISSEQAQAIMDAG
IKKVKIRSVITCKTRYGVCKHCYGRNLATGGPVDIGEAVGIIAAQSIGEPGTQLTMRTFH
TGGVAGDDITQGLPRVEELFEARRPKGQAIVAEEDGVVAIREVKGRREIEITKDNGEKNV
YSVPYGARLKVNDGDRVEAGDELTEGSVNPHDLLKIKGPAGVQIYLLQEVQRVYRLQGVE
INDKHIEVMIRQMLRKVKVEDAGDTDLLPGALHDVFEFEEENRKVIERGGQPAVAKPVLL
GITKASLATDSFLSAASFQETTRVLTEAAIKGKLDPLVGLKENVIIGKLVPAGTGMSRYR
NIEVVTEDQAKQEDDSDILLPTGEGQYDLK
NT seq 3513 nt   +upstreamnt  +downstreamnt
ttgttagaattaaacaattttgacagtatccgtatcggcttggcttcaccggacaaaatc
cggcagtggtccagtggagaggtaaagaaaccagaaactattaactaccgaacattaaag
ccggaacgggacggactgttctgtgagcgaatttttggtcccaccagggactgggaatgt
cattgcggaaaatacaaacgtgtacgttataaaggtgttgtttgtgaccgttgcggcgta
gaagtaaccagatccaaggtccgccgggagaggctgggccatattgaattggctgctccc
gtatctcacatttggtattttaagggtattcccagccgcatgggtttgttgctggatatg
tctccgcgggccctggaaaaggtattatactttgtatcctatattgtcatagaacccggt
gataccccgctgctgaaaaaacaactgctgaccgaaaccgagtaccgggagtacaaggat
aagttcggtaactcctttaaggctgccatgggtgccgaagccattaaaaaattactggaa
gaaattgatctggatgaattggccagggaactccgccaggagttaaaggatgtttccggc
cagcggaaaattcgggccattcgccggttagaagtggtggaagcattcaggaaatcaggc
aaccgcccggaatggatgattttagatgtggtgccggttatcccgccggaactaagaccg
atggtacaactggacggcggacgttttgctacctctgatttgaatgacctgtaccgccgg
gtaattaaccgtaataaccgtttaaagcgcttattagatctaggagccccggatattatt
gtacgtaacgaaaaacgtatgctccaggaagcggtggatgccttaattgataacggccgc
cgtggtcgaccggtaaccggccctggcaaccggccgttaaaatccctgtcagacatgctt
aaaggtaagcaaggacgtttccgccaaaacctgctgggtaagcgggtggattactccggt
cgttccgttatcgtggttgggcctaagctcaaaatgcaccagtgtggtttgcccaaggaa
atggccctggaactgttcaaaccctttgtgatgaagaaactggtcaacgacgggtatgcc
cacaacattaaaagtgccaagcggatggtagaaagggtgcggcccgaggtctgggatgtt
ttggaggaagtgattaaagaacacccggttctgttaaaccgtgccccaaccctgcaccgt
ttgggcattcaagcctttgagccggtattggtggaaggccgggctattaaaattcacccg
atggtatgtacagcttacaatgctgacttcgacggggaccaaatggctgtacacgttccc
ctttcggccgaggctcaggccgaagccaggctattaatgctggccgccaataacatcctg
aaccccaaagacggtaaaccggtggccagtcccacccaggacatggttttgggatgttac
tatctgaccatcgaaagagatggtgacctgggcgaaggtagtgtctttaaagatgaagat
gaagctatcctggcctactacaataaagcagtttccctgcatgccaaggtacaagtccga
attaacggcaaaagaatagataccacggtgggtcgggttatctttaaccaggttattccc
aaggaactgggatatatcaacacagtttgtgataaaaaacaacttagtaaaattgttaac
gactgctatcgtaaactaggcaacgccagtaccgctgaattactggatgggattaaagaa
ttaggttatcggttctctacccaggccggtattaccattggtgtggccgatattaccatt
cctaaagaaaagaaagaaattctggcgcaggccgatgagcaggttaataagattgagacc
caattccggcgcggtctgatcaccgaggatgagcgttaccgcaaggtgatcgcggtttgg
aatgatgctacagataaagttaccaaggccctaatgggcgccctggataaatttaacaac
gtgtacatgatggccacctccggtgcccgtggtaacattcagcagattcgtcagctggcc
ggtatgcggggcctgatggctgacccctccggtaggatcatcgaccttcccattaaagct
aacttccgggaaggcctcaccgtattggagtacttcatttccacccacggtgcccgcaaa
ggtttggctgataccgccttgcgtaccgctgactccggttacctgacccgccgcctggtg
gatgtagcacaggatgtaattgtcagagaagaagactgtggtaccaccgaaggtattgag
gttactgaagttagagacggtaccgaaaccattgaaaaattagccgaccgtttggatggc
cgggtacccatggaaccggtggtacacccggaaaccggggaagtaattatctctcaggag
caggttgatcgccgcgagatgatcagctccgaacaggcccaggccatcatggatgccggt
attaaaaaggttaagattcgttccgtaattacctgcaaaacccgttatggtgtatgcaaa
cactgttacggacggaacctggccaccggcggaccggtggacattggtgaggctgtaggt
attattgcggcccagtccattggtgagcctggtacccagttaaccatgcgtaccttccac
accggtggggtggccggtgatgatattacccagggtctaccgcgggtggaagaacttttt
gaagcccggagacccaaaggtcaggccattgtggctgaggaagacggggttgtagcaatc
agagaagttaaaggtcgccgagaaattgagataaccaaagacaatggtgaaaagaatgtg
tactcggttccttatggtgccagactcaaggttaatgacggggatcgagtggaagctggc
gatgagctgaccgagggctcggttaatccccacgacttgttgaaaattaaaggtcctgcc
ggtgtacaaatctacctgctgcaagaggtgcaaagggtatatcgcctgcagggtgtagaa
attaacgacaagcacattgaggtcatgattcgccagatgctgcgcaaagtgaaggtagaa
gatgccggagacactgatttgctgccgggtgctctgcatgacgtctttgaatttgaagaa
gaaaatcgcaaagttatagagcgaggcggccaaccggcggtagcgaaaccggtgctgctg
ggtattactaaggcctccctggccactgactccttcttgtccgcggcctcattccaagag
accaccagggtgctgaccgaagcagccatcaagggtaaacttgacccgctggtgggtcta
aaggaaaacgtcatcatcggtaaattggtaccggccggcacaggaatgtcccggtaccgg
aatatcgaggtagtaactgaagaccaggcaaaacaagaagatgattccgacattctgttg
cccaccggtgaaggacaatacgatctaaagtag

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