KEGG   Desulfotomaculum nigrificans: Desca_1703
Entry
Desca_1703        CDS       T01498                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
dca  Desulfotomaculum nigrificans
Pathway
dca03030  DNA replication
dca03430  Mismatch repair
dca03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Desca_1703
   03430 Mismatch repair
    Desca_1703
   03440 Homologous recombination
    Desca_1703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dca03032]
    Desca_1703
   03400 DNA repair and recombination proteins [BR:dca03400]
    Desca_1703
Enzymes [BR:dca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Desca_1703
DNA replication proteins [BR:dca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Desca_1703
DNA repair and recombination proteins [BR:dca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Desca_1703
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DUF6282 HROB tRNA_anti_2
Other DBs
NCBI-ProteinID: AEF94551
UniProt: F6B7J7
Position
complement(1824791..1828405)
AA seq 1204 aa
MDEFVHLHVHSEYSLLDGATRIKQAARQARESGMNALALTDHGCMFGAVEFYKTCHQEGI
KPILGCEVYVAPRSMTDRIPKLDDQLYHLVLLAENQEGYKNLLKLVSLGYTEGFYYKPRV
DKQTLARYHKGLIALSGCVAGEVAQRILSGQSQQARQAARDYVDIFGPNNYFLELQDHGF
QEQKTVNRELLRIAGDMQLPLVATNDVHYLKREHAYIQDVLLCIQTGKSVNTPGRMKFAS
QEMYLKNPHEMNLVFGEIPEALTNTVRIAERCHVELEFGKLHLPYFTVPEGYTPASYLRE
LCEAGAVKRYGHCSGPVKERLDYELKVIGQMGYDEYFLIVWDFIKFARERGIGVGPGRGS
AAGSIVSYVLGITSLDPLRYGLLFERFLNPERISMPDIDVDFDFERRGEVIEYIVQKYGT
DRVAQIITFGTMAARAAIRDVGRALDMSYGEVDRVAKLVPGELNMTIAKALASSPELKAA
YDHDPEVKRLVDTAAELEGMPRHASTHAAGVVISRDPLVEYLPLHKAADGLVTTQFPMGT
VEELGLLKMDLLGLRNLTVINEAVNLIKQTRGRALDMNAIALDDQITYNMLARGEGVGVF
QLESSGMRNILKELKPSAFEDIVALVALYRPGPLGSGMVEDFIQRKHGLTKPDYFHPDLE
PILKETYGVILYQEQVMMIARVMAGYTLGQADALRKAMGKKIPEIMAMHRQWFIHGTTVD
EKGKPLKSPIPGAVARGYDVALAEKMFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKANY
GVEYMAALLTSVRDNTDKVVIYIEECRRMGIQVLPPDINQSRENFTVVNGAIRFGLAAVK
NVGLGAVQEIIRAREKDGDFTSFTDFCSRLDTRVVNRRVLESLIKAGALDQFGHRAQLLK
GLDDGLELAARVQRDRNQGQVSLFDLMTDKAEEAMEIPLPDVQPLTIREQLQLEKETLGL
YISGHPLAEFNWLTEALEARRIVELLEAMDGQPVLVVGNIVTIKRITSRKGDLMAFATVE
DLTGNCEVVIFPDVYRRYAKLLDRGLPLLIRGKINHSGEEAKVLAEEIWLLEEISKKLWL
KVNCEDATLMKELEKVLAKYPGNTPVFLFNPTKRQVVPLEQVLWVNPVPELRNDLAQLID
WDDIKLRCGINKVDLMPQASMAPVTTPAPLQRKSKVEGSQKPAINGDRSFDPDNYPLPAS
LLEL
NT seq 3615 nt   +upstreamnt  +downstreamnt
ctggacgagtttgtacacctgcatgtacacagtgaatatagtttgttggacggtgcaacc
aggattaaacaggcggctcggcaggccagggaaagtggcatgaatgcactggccttgacg
gatcacgggtgtatgttcggggcggtggagttttataaaacctgccaccaagaagggatt
aaacccattctgggctgcgaggtttatgtagctccccgtagcatgactgaccgtattcct
aagttagatgatcaactctatcacctggttttgctggcagagaatcaagagggttataaa
aatttattaaagctggtttccctgggttataccgaaggattttattataaaccaagggtg
gataaacagaccctggcccgttatcataaaggactgatcgccctcagtggctgcgtggcc
ggtgaggtggcgcaacggattctgagcggtcaatcccagcaggcccgccaagcagcccgg
gactatgtagatattttcggacccaataattattttctggagctacaagatcacggtttt
caggagcagaaaacagttaaccgtgaactgctgcggatagccggtgatatgcagctgccg
ctggtagccaccaatgacgtgcactatcttaagcgggaacatgcctatattcaagatgtt
ttactatgtattcagacaggtaaaagtgtaaacacacccggcaggatgaaatttgcatcc
caggagatgtatttaaaaaatccccacgaaatgaatttagtttttggcgaaatccctgag
gctttaactaacacggtaagaatagcggaacgctgtcatgtagaattggaatttggcaag
ctgcatctgccttattttacggtacctgagggctacactccggccagctatttacgggaa
ctttgtgaggccggggcggttaaacggtacggtcattgcagcgggccggtgaaagaacgg
ttagactatgaacttaaagtcattggccaaatggggtatgatgaatattttctgattgtt
tgggattttattaagttcgccagagaaaggggtattggtgtgggacccggccgcggttcc
gcggcaggcagtatcgtatcttatgtattgggcatcaccagtctggacccattgcgatat
ggtttactttttgagcgttttttaaatcctgagcgcatatctatgcccgatatagacgtt
gattttgactttgaacggcggggcgaggttatcgaatatatcgtgcaaaagtacggcact
gaccgggtggcccaaattattacctttggtaccatggccgcccgggcggccatccgggat
gtgggccgggctctggatatgtcctatggtgaggtggacagggtggccaagctggtacca
ggggaattaaacatgaccattgccaaagccctggccagttcaccggaattaaaggcagcc
tatgaccatgacccggaggtcaagcgtttagtggataccgcggccgaattggaaggtatg
cccaggcacgcttccacccacgccgccggggtggtgatctccagggatcctttggtggaa
tatttaccactgcataaagcggccgatggcctggtgaccacccagtttcccatgggtacc
gtagaggaattgggcctgttaaagatggatttgttgggcctgcgtaacctgacggtgatt
aatgaggcggttaacctgatcaaacaaaccaggggccgtgccttggatatgaatgcaatt
gccctggatgatcagatcacctacaatatgctggcccggggtgaaggggtaggcgtattc
caactggaaagcagcggtatgcgcaatatacttaaagaacttaaacccagtgcctttgaa
gatattgttgccctggtagctttatatcggcctggtccgctgggcagcggtatggtggag
gattttatccaacgtaagcatggtttaaccaaacctgattattttcatccggatttagaa
cccattctgaaggaaacctacggagtaattttatatcaagaacaggtcatgatgattgcc
cgggtgatggccggctatactttgggacaggccgatgccctgcgcaaggccatggggaag
aaaattccggaaatcatggctatgcatcgccagtggtttattcacggaactactgtggat
gaaaagggtaagccgctaaaaagccccatcccgggggcggtagcccggggttacgatgtg
gcgttggcggaaaaaatgttcgatttaatggaatactttgctggttatggtttcaataaa
tctcactcggcagcctacgccctggtttcttaccagactgcctatttaaaagccaattac
ggtgtagagtatatggccgccctgcttacctcggtgcgggataacacggataaagtagtt
atttatatagaagaatgccggcggatgggtattcaagtgttaccgccggatattaaccag
agccgggagaattttaccgtggttaacggtgccattagatttggtttggctgccgttaaa
aacgttggcttaggagcagtgcaggagatcatccgggcccgggaaaaagacggtgatttc
accagttttactgacttttgcagtcggttggatacccgggtggttaaccgccgggtgctg
gaaagtctgattaaagccggtgccctggatcaatttggccaccgggcccagctgcttaaa
gggctggacgatggccttgaattagcagccagagtgcagcgggataggaaccagggtcag
gttagtttgtttgacctgatgaccgacaaggcagaagaggccatggaaattcctctaccg
gacgtgcaaccccttaccatcagggaacaactgcagctggagaaagaaactttaggactg
tatatttcaggacaccccttagctgaatttaactggctgacggaggccttggaagccaga
cggatagtagaattgctggaggcaatggacgggcaaccggtattggtggtgggtaacatt
gtcacaataaaaaggataacctcccgcaaaggtgacctaatggctttcgcaacagtggaa
gacctgaccgggaactgtgaagtggtaatatttccggatgtttaccggcgttatgctaag
ctattagaccggggtttaccgctgttgatcagggggaaaataaatcattccggcgaagag
gctaaagttttggctgaggaaatatggctgctggaagaaataagtaaaaagttgtggctg
aaagtaaactgtgaagatgcaacattaatgaaagaattggaaaaggtactggctaaatat
ccgggtaacacacctgtatttctgtttaatcccacgaagcgacaagtggttcccctggaa
caggtactatgggttaatccggtacctgaattaagaaatgatctagctcagcttatagac
tgggatgatattaagctgcgttgtgggattaataaagtagacctcatgcctcaggcatct
atggcaccagtgactaccccggcaccgcttcagaggaaatctaaggtggagggctcacaa
aaaccggccataaatggggaccgctcctttgacccggacaattacccgctgccagccagt
ctcctggaactgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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