KEGG   Solidesulfovibrio carbinolicus: C3Y92_06595
Entry
C3Y92_06595       CDS       T06503                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
dcb  Solidesulfovibrio carbinolicus
Pathway
dcb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dcb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C3Y92_06595 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dcb03021]
    C3Y92_06595 (rpoC)
   03400 DNA repair and recombination proteins [BR:dcb03400]
    C3Y92_06595 (rpoC)
Enzymes [BR:dcb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C3Y92_06595 (rpoC)
Transcription machinery [BR:dcb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C3Y92_06595 (rpoC)
DNA repair and recombination proteins [BR:dcb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C3Y92_06595 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Blo-t-5 DltD
Other DBs
NCBI-ProteinID: QAZ66921
UniProt: A0A4P6HIE3
Position
1502296..1506462
AA seq 1388 aa
MSLDELFSMRGIGQTAVSSRTLKSIRISIASPEKIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMVDLEKVLYFDSYLVLDPKDTNLTKFQVISEEQYIQVIDHYGGE
DALVVGMGAEAVRGLLEEIDLLTLRAELREESMTTKSQTKKKKIIKRLKVVEAFIESANK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPDIIIR
NEKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VIVVGPRLKLHQCGLPKKMALELFKPFIYSKLEEKGLATTIKTAKKMVEREELVVWDILE
DVVREYPILLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLS
VEAQIECRVLMMSTNNILSPANGTPIIVPSQDIVLGLYYLTIERSFAQGEGKVFADTGEV
ICAVDAGVVSLHARITCRINGERVKTTPGRIIVGELMPEGVPFELVNTVLNKRSIGKLVG
DTYRMAGTKATVILCDRLKDLGYEYATRAGVSIGVKDLAIPSTKARLLEASQKEVDDIEI
QYGEGIITRTEKYNKVVDVWTKATNDVATEMMKEISWDTLTDEASGRVEKNTSSNPIFMM
IHSGSRGNQDQMRQLAGMRGLMAKPSGEIIETPITSNFREGLSVAQYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVVQDVIITEIDCGTVDGLEITHYVKAGDIKQRVHERALGRTCM
FDVYDPVTDEVIIPTNALIDEHYAQVIEDKGFSSLMIRSTLTCQSKHGVCAMCYGRDLAR
GHLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTAAREIAQSSVTAQHSGRIVLSRVKS
IVNQQGHTIMMGKSGQVSVVDDQGRERERYSLPSGAKLYAVAGQEVKKDQLLAEWDPFNE
PFVTDVAGVIKFTDIVEGKTYQEKVDDATKRATQTIIEYRTTSYRPSVSIVDERGNPKYR
PGTNTPAIFSMPVGAILMLRDGQEVFEGDIIARKPRESSKTKDIVGGLPRVAELFEVRKP
KEMAVVSEIDGLVSFGPETKGKRKIIVTPEAGDPKEYLIPRGKHVTVQEGDFVEAGELLT
EGYPELHDILKIKGEKFLAKYLVDEIQDVYRFQGVGINDKHIEIIVRQMLKKVSILDSGE
TNFLIGEQVDKIRFMEENARVMEEGLKPAMAEPLVLGITQASLSTDSFISAASFQETTKV
LTEASLMGKDDSLRGLKENVIVGRLIPAGTGYRRYMDSEIAVPRQPERPDRFLEELEESP
IVGSIDLD
NT seq 4167 nt   +upstreamnt  +downstreamnt
atgtccctggacgaattgttcagcatgcgcggcatcggccagaccgccgtgtccagccgt
acgctcaaatccatccgcatatccatcgcctctcccgaaaagatccgggaatggtcgttt
ggtgaagtcaaaaagcccgagaccatcaactaccggacgttcaagcccgagcgcgacggc
cttttttgcgccaagatcttcggaccggtcaaagactacgagtgcaactgcgggaagtac
aagcgcatgaagcaccgcggcatcgtgtgcgaaaaatgcggcgtcgaagtcatcgcctcc
aaggtccgccgcgagcgcatgggccacatcgaactggccgccccggtggcccatatctgg
tttttgaagaccctgccgtccaagatcggcaccctgctcgacatgaccatggtggacctg
gaaaaggtcctctatttcgattcctatctggtgctcgaccccaaggacaccaacctcacc
aagttccaggtcatttccgaggagcagtacatccaggtcatcgaccactacggcggcgag
gacgctctggtcgtgggcatgggcgcggaagccgtgcgcggcctgcttgaggagatcgat
ctgctgacccttcgcgccgagctgcgcgaagagtccatgaccaccaagtcgcagaccaaa
aagaaaaagatcatcaagcgcctcaaggtcgtcgaggccttcatcgaatcggccaacaag
cccgagtggatgatcatggaagtcattccggtcatcccgcctgagctgcgccccctggtc
cccctggacggcggccgtttcgctacctccgatttgaacgacctctaccgacgcgtgatt
aaccgcaacaaccgcctcaagcggctcattgagcttggcgcgccggacatcatcatccgc
aacgaaaagcgcatgctccaggaagccgtggatgcgctctttgacaacggccgtcgcggt
cgggccatcaccggcaccaacggccggccgctcaagtcgctgtccgacatgatcaagggc
aagcagggccgcttccgccagaacttgctcggcaagcgcgtcgactattccggccgttcg
gtcatcgtcgtcgggccccggctcaagctccaccagtgcggcctgcccaaaaagatggcc
ctggagctgtttaagcccttcatctattccaagctggaagaaaaggggctggccaccacc
atcaagacggccaagaagatggtcgagcgcgaagagctggtggtctgggacatcctcgaa
gacgtggtgcgcgagtacccaattcttcttaaccgcgccccgacgctgcaccgcctgggc
atccaggcctttgaaccgacgctggtcgaaggcaaggccatccagctgcatccgctggtc
tgctcggcctacaacgccgacttcgacggcgaccagatggccgtccacgtgcccctgtcc
gtggaagcccagatcgaatgccgcgtgctcatgatgtccaccaacaacatcctttcgccg
gccaacggcacgcccatcatcgtgccgtcccaggatatcgtccttggcttgtactatctg
accatcgaacgcagcttcgcccagggcgagggcaaggtctttgccgacaccggcgaggtc
atctgcgccgtggacgccggggtggtcagcctgcacgcccgcatcacctgccgcataaac
ggcgagcgggtcaaaaccacgccgggccgcatcatcgttggcgaactcatgcccgagggc
gtgcccttcgagctggtcaacaccgtgctcaacaagcgcagcatcggcaagctcgtgggc
gacacctaccgcatggccggcaccaaggccacggtcatcctgtgcgaccgcttaaaggac
ctcggttacgagtacgcgacgcgcgccggcgtctccattggcgtcaaggacctggccatt
ccgtccaccaaggcccgtttgctggaagcctcccagaaagaggtggacgacatcgaaatc
cagtacggcgaaggcatcatcactcgtaccgagaaatacaacaaggtcgtcgacgtctgg
accaaggccaccaacgacgtggccacggaaatgatgaaggagatctcctgggatacgctc
accgatgaagcctccgggcgggtggagaagaacacctccagcaacccgatcttcatgatg
atccactccggttcgcgaggcaaccaggaccagatgcgccagctggccggcatgcgcggc
ctgatggccaagccgtccggcgaaatcatcgagacgcccatcacctcgaacttccgcgag
ggcctgtcggtcgcccagtacttcaactccacccacggcgctcgaaagggtctggccgat
acggcccttaagaccgccaactccggttacctgacccgtcgtctcgtcgacgtcgtccag
gacgtcattatcaccgagatcgactgcggcactgtcgatggcctggagatcacccactac
gtcaaggccggcgacatcaagcagcgcgttcacgagcgcgccctgggccggacctgtatg
ttcgacgtctacgatccggtcaccgacgaggtcatcatcccgaccaacgcgctcattgac
gagcactacgcccaggtcatcgaagacaagggcttcagctcgctgatgatccgctcgacc
ctgacctgccagtccaagcacggcgtgtgcgccatgtgctacggccgcgacctggcccgg
ggacacctggtcaacgtcggcgagaccgtgggcatcatcgccgcccagtccatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggcacggcggcgcgcgaaatc
gcccagtcgtcggtgacggcccagcacagcggccggatcgtgctgtctcgcgtcaagtcc
atcgtcaaccagcagggccacaccatcatgatgggcaagtccggccaggtgtcggtggtc
gatgaccagggccgcgaacgcgagcgctacagcctgccctcgggcgcgaaactgtacgcc
gtggccggccaggaagtgaaaaaagaccagttgctggccgaatgggatccgttcaacgaa
ccgtttgtcaccgacgtcgccggtgtgatcaagttcaccgacatcgtggaaggcaagacc
taccaggagaaggtggacgacgccaccaagcgcgccacgcaaaccatcatcgaataccgc
accacctcgtaccgtccgtcggtctccatcgtggacgagcggggcaatcccaaataccgg
cccggcaccaacaccccggccatcttctccatgccggttggcgcgattctcatgttgcgc
gacggccaggaggtcttcgaaggcgacatcatcgcccgtaagccccgcgagtcctccaag
accaaggacatcgtcggcggtcttccccgcgtcgccgagctgtttgaagtccgcaagccc
aaggaaatggcggtcgtctcggaaatcgacggtctggtctcctttggcccggaaaccaag
ggcaagcgcaagatcatcgtcacccccgaggccggcgatcccaaggaatacctcattccg
cgcggcaagcacgtcacggtccaggaaggcgacttcgtggaagccggcgaactgctgacc
gaaggctacccggaactgcacgacatcctgaagatcaagggcgagaagttcctggccaag
tacctcgtggacgaaatccaggacgtgtaccggttccagggcgtgggcatcaacgacaag
cacattgaaatcattgtgcgccagatgctcaaaaaggtctccatcctcgattccggcgag
accaacttcctcattggcgagcaggtggacaagatccgcttcatggaagaaaacgcccgg
gtcatggaagagggcctcaagcccgccatggccgaaccgctggtgctgggtatcacccag
gcctcgctgtccacggattcgttcatctcggcggcctccttccaggagaccaccaaggtg
ctcaccgaagcctcgctcatgggcaaggacgactccctgaggggacttaaggaaaacgtc
atcgtgggccggctcatcccggccggcaccggctaccgtcgctacatggacagcgaaatc
gccgtgccgcgccagcccgagcgccccgaccggttcctggaagagctggaagaaagcccc
atcgtcggcagcatcgatctcgactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system