KEGG   Dermatophilus congolensis: SAMEA4475696_2073
Entry
SAMEA4475696_2073 CDS       T05038                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
dco  Dermatophilus congolensis
Pathway
dco03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SAMEA4475696_2073 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dco03021]
    SAMEA4475696_2073 (rpoB)
   03400 DNA repair and recombination proteins [BR:dco03400]
    SAMEA4475696_2073 (rpoB)
Enzymes [BR:dco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SAMEA4475696_2073 (rpoB)
Transcription machinery [BR:dco03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SAMEA4475696_2073 (rpoB)
DNA repair and recombination proteins [BR:dco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SAMEA4475696_2073 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Peptidase_M23
Other DBs
NCBI-ProteinID: SNV24509
UniProt: A0A239VRQ8
Position
1:complement(2316614..2320099)
AA seq 1161 aa
MASSRIATQKMSSAITPSGRVSFAKIREPLEVPDLLALQTESFDWLLGNERWQDRVAEAL
EAGRNDVAEHSGLEEIFEEISPIEDFSGSMSLSFRDHRFEEMKYSLEECKEKDMTYSAPL
FVTAEFMNNTTGEIKSQTVFMGDFPLMTDQGTFIINGTERVVVSQLVRSPGAYFESAPDK
TSDKDIFTAKIIPSRGAWLEFEIDKRDQVGVRVDRKRKQSVTVLLKALGWTDAQILEEFG
EYDSMRATLEKDNTASQDEALLDIYRKLRPGEPPTKEAAQNLLNNLYFNPKRYDLAKVGR
YKVNKKLGIETDRAVNTLTVEDIVATIKYLVALHAGETSLPGHRDGKDVAVRVETDDIDH
FGNRRLRSVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIREFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGP
NIGLIGALASYARINPFGFIETPYRKCEFGAVTDEVHYLSADEEDEFIIAQANAPIGEDG
KFVEERVLARRKGGESDDVPAEDIDYMDVSPRQMVSAATALIPFLEHDDANRALMGANMQ
RQAVPLVRSEAPFVGTGMEYRAALDSGDVVRAKAAGVVTRVTADLVDVTGDDGSYLTYRI
DKFRRSNQGTCYNQRVVVNEGDRVELGEVIADGPATAGGEMSLGRNLLVAFMPWEGYNYE
DAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEDVLADLDERGIIRI
GAEVRDGDLLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVKV
FDREEGDELPPGVNQLVRVYVANKRKITVGDKLSGRHGNKGVISRIMPVEDMPFLEDGTP
VDIILNPLGVPGRMNIGQVLEIHLGWIASRGWDIEGDPDWARMIPEDGRTAPALTRVATP
VFDGATEEEIRGLLGSTLPTRDGQRLVATDGKARLFDGRSGEPYPDPIAVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VNGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSTDGTEIDLREPEQEVF
RAADELGIDLSRREPSTVEEV
NT seq 3486 nt   +upstreamnt  +downstreamnt
ttggcttcctcgcgtattgcgacccagaagatgtcgagcgccatcaccccctccgggcgg
gtgtcgttcgcgaagattcgcgaacccctcgaagtacctgaccttcttgctctccaaacg
gagagctttgactggttgcttggtaacgagagatggcaggatcgagttgcggaggccctc
gaggctggccggaacgatgtggccgagcactccggcctcgaagagatctttgaagagatc
tcgcctatcgaagacttctcgggttcgatgtccctctcgttccgtgatcaccggttcgaa
gagatgaagtactcccttgaggagtgcaaagaaaaggacatgacgtacagcgctccgctg
ttcgtcactgccgagttcatgaataacacgactggtgaaattaaaagccagaccgtgttc
atgggtgacttcccactcatgacagatcaaggcaccttcatcattaacggcaccgagcgt
gtcgttgtttcgcagctggtgcgcagccctggtgcatatttcgagtctgcgccagataaa
accagcgacaaagacattttcactgccaagatcatcccgagccgtggggcctggctcgaa
ttcgagattgacaagcgtgaccaggttggtgttcgtgttgatcgcaagcgcaagcaatct
gtcacggtgctccttaaagcactgggctggaccgacgctcagatccttgaagagtttggt
gagtacgactccatgcgtgccaccctcgaaaaggacaacactgcttcgcaggacgaagcc
cttcttgacatctaccgcaagctgcgtccgggcgaacctccgaccaaggaagcagctcag
aacctccttaacaatctgtacttcaaccccaagcgttacgaccttgccaaggtcggccgt
tacaaggtcaacaagaagcttggtattgaaacggatcgggcggtcaacactctgactgtc
gaagacatcgtcgcaacgattaaatacctggtagcgctgcacgcaggagaaacatctctg
ccagggcaccgtgacggcaaagacgtggctgttcgcgtcgaaacggatgacatcgatcac
ttcggaaaccgtcgtcttcgcagcgttggtgaacttattcagaaccaggtccgtacaggc
ctgtcacgcatggagcgtgttgtccgtgagcgcatgacgacgcaggacgttgaggcaatc
acgccgcaaacgttgatcaacatccgtcctgttgttgcctctatccgtgagttctttggc
acgagccagttgtctcagttcatggatcagaacaatccacttgcaggactgacgcacaaa
cgtcgtctttctgcacttggtcctggtggtctttctcgcgaccgcgctggcatggaagtt
cgtgacgttcacccgtcgcactacggacgtatgtgtcccattgagacccctgaaggtccg
aacatcggtcttattggtgctttggcttcctatgctcgcattaaccccttcggttttatt
gagacgccttaccgtaagtgcgagttcggggcagtcacggatgaggttcactacctgtcc
gcagacgaagaggacgagttcatcatcgctcaggcaaatgccccgatcggtgaagacgga
aaattcgttgaagagcgtgtgctagctcgtcgtaaaggcggcgaatctgacgatgttcca
gccgaagacattgactacatggatgtctcgccgcgtcagatggtttctgccgcaacagcg
cttatcccattcctggagcacgatgacgccaaccgtgccctgatgggagctaacatgcag
cgccaggcagtgccgctggtgcgcagtgaagctccttttgtgggtacgggtatggagtac
cgcgcagctctcgactccggtgatgttgttcgtgccaaggctgctggtgtggtcactcga
gtgaccgcagatctcgtcgatgtcaccggtgatgacggctcctacctcacatatcgcatc
gataagttccgccgctctaaccagggcacttgttacaaccagcgcgtcgtggtgaatgaa
ggtgaccgcgtcgaacttggcgaagttattgctgacggtcctgcgactgccggtggtgag
atgagccttggacgtaacctccttgtggcattcatgccgtgggaaggctacaactacgaa
gacgccatcatcctgtctcagcgactagtccaggatgacgtcctttcttcgatccacatc
gaagaacacgaagtcgatgcccgtgataccaagctcggcccagaagaaatcactcgagac
atccccaacgtttctgaggatgtacttgctgatctggacgaacgcggcatcatccgtatc
ggcgctgaagttcgtgacggtgatctgctcgtcggaaaggtcactcccaagggtgaaacc
gagctgactccggaagagcgtttgcttcgcgccatcttcggtgagaaagcccgcgaggtg
cgggacacctctctcaaagttccacacggtgaaacgggaacggtcattggtgtcaaggtc
tttgaccgtgaagagggagatgaacttccaccaggcgtgaaccagcttgtgcgcgtctac
gtcgcaaacaagcgcaagatcacagtgggtgacaagctttctgggcgtcacggaaacaag
ggtgttatcagccgcatcatgccggttgaagacatgcccttcttggaagacggcacgccc
gttgacatcattcttaacccgctgggcgttcctggtcgtatgaacatcggtcaggtgctt
gaaattcaccttgggtggatcgcaagccgcggatgggacatcgagggtgatcccgattgg
gcacgcatgatccctgaggacggtcgcactgctcctgctttgacccgcgttgctacgcct
gtttttgatggcgcaacagaggaagaaatccgaggtctgcttggatcgacacttcctacc
cgggatgggcagcgtcttgttgctactgatggaaaagcgcgtctcttcgatggtcgctcc
ggtgagccttaccctgatcccatcgcagtgggatacatgtacatcctgaagctgcaccac
ctggtcgacgacaagatccacgcccgtagcacaggcccgtactccatgatcacgcagcag
ccactgggtggtaaggctcagttcggtggtcagcgctttggtgaaatggaagtgtgggca
ctggaggcttacggtgccgcgtatgcgctgcaggaacttctcacgatcaaatctgacgac
gtcaatggtcgcgtgaaggtgtacgaggccattgtgaagggtgagaacattcccgagccg
ggcatcccggaatcgttcaaggttctcatcaaagaaatgcagtctttgtgcctgaatgtg
gaagttctttctacggacggcactgagatcgacctccgtgagccggagcaggaagtgttc
cgcgcagctgatgagctcggaatcgacctgtcccgccgcgagcccagcacggtcgaagag
gtctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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