KEGG   Daucus carota (carrot): 108197313
Entry
108197313         CDS       T05350                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03013  Nucleocytoplasmic transport
dcr03015  mRNA surveillance pathway
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108197313
  09122 Translation
   03013 Nucleocytoplasmic transport
    108197313
   03015 mRNA surveillance pathway
    108197313
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108197313
   03041 Spliceosome [BR:dcr03041]
    108197313
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108197313
    TREX complex
     108197313
Spliceosome [BR:dcr03041]
 Complex C
  Other components
   EJC/TREX
    108197313
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108197313
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5
Other DBs
NCBI-GeneID: 108197313
NCBI-ProteinID: XP_017220385
UniProt: A0A175YP77
Position
8:20844187..20847283
AA seq 258 aa
MAESLLDMTLDQLIQKNKASNSSSSSVAARSAVRGRGGAAGKASRGRGRAAGANFSAPGP
TRRAPNRVQPRATPYFTPQGLNQMQVQELLMPGGMDMESGTKLYISNLDYGVTNEDIKVL
FSEVGELRRYSIHYDKSGRSKGTAEVAFAHQSDAFAAVKRYNGVQLDGKPMKIEMVGVKL
VAPANIAMPPTTNGFPGNTGGAFRRQQRVAGRGRDRGSGGRGSAPGRGRGRGRGQGEKVS
PEDLDADLEKYHQEAMQL
NT seq 777 nt   +upstreamnt  +downstreamnt
atggcggagagcttactagacatgacgctcgatcaactcatccagaagaacaaagcttct
aatagctcctcttcctccgtcgccgctcgatccgccgtccgtggccgcggtggcgctgcc
ggaaaagcttctcgtggccgcggtagagccgccggcgctaatttttcagctcctggtccc
actcgtcgtgctcctaatcgcgttcagcctcgagcgacgccgtatttcactcctcaggga
ttgaaccaaatgcaagtgcaagagttgttgatgcctggaggaatggatatggagtcggga
acgaagctatatatctcgaacttggattacggagttactaatgaagacattaaggtgcta
ttctctgaggttggggagttaagaagatactctattcattatgacaagagcggacgatca
aagggaactgctgaagttgcttttgcacatcaatcggatgcttttgctgctgtgaagaga
tacaatggtgtccaacttgatgggaaacccatgaagattgagatggttggagtaaagtta
gtcgcccctgctaacattgccatgccgccaactacaaatggctttccaggaaatactgga
ggtgctttccgaagacaacaaagggttgcaggcaggggacgtgatcgtggcagtggtggt
cgtgggtctgcgccaggccgtggaagaggaagagggagaggacaaggtgagaaggtgtca
cctgaagatcttgatgctgatttggagaagtatcatcaagaggctatgcagttataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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