KEGG   Daucus carota (carrot): 108206566
Entry
108206566         CDS       T05350                                 
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A isoform X1
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    108206566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dcr03032]
    108206566
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108206566
Enzymes [BR:dcr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     108206566
DNA replication proteins [BR:dcr03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    108206566
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     108206566
    Bloom's syndrome complex (BTR)
     108206566
   FA (Fanconi anemia) pathway
     108206566
SSDB
Motif
Pfam: DEAD RQC Helicase_C HRDC RecQ_Zn_bind ResIII Herpes_UL6 CCDC-167 Cob_adeno_trans YabA DUF724 GPS2_interact Rhodanese Transformer
Other DBs
NCBI-GeneID: 108206566
NCBI-ProteinID: XP_017232394
Position
2:27782603..27796019
AA seq 1210 aa
MVNGNLMSSKKHSTGGAIPGEKCPKHNWSQHADAHANFSNQNKHLRTNFLYSLSTHKPHI
EGEMAARSITCQLHNIEGVNSAQVEKACQAISRIKLSSNKYIKPGRSSPLVKDVGTIPLG
DATRKIPQNLGGANGNFLGQMPPYISSNDSNTTPDKPKGMASSYPSGINGIAEAGKVACR
QSNGQAPIHNHSHPNVTDGLYNQSTHASTVNGFQKHFPDDIDDDDILGSLDVDKIVMEHY
QSSGTPQPLMSKLPSITPTGSKDNNTRPEESCLPPELCVNCSHGFKLGLCYEAAKHLQSM
KDMLISISNDLLDNITDLNSEQIGKLHQDRAQLKKQIQQLEKHLHTTSVEEERRKSQFSA
STASSRTIYSETPSAAAFHIDPMRLDTQFHMRNEPDGFDRWNSSYGVPPTPVEREPYIPK
YIDVNYIEGSNDKKWSSLSFPWTKKLEVNNKTIFGNHSFRPNQREVINATMSGHDVFVLM
PTGGGKSLTYQLPAYICPGITLVISPLVSLIQDQIMHLSQANIPATYLSANMEWTEQQDI
FRELCLDSCRYKLLYVTPEKVAKSDVLLRHLEKLYSRQLLARIVIDEAHCVSQWGHDFRP
DYQGLGILKQKFPDTPVLALTATATSSVKEDVVQALGLVDCIIFRQSFNRPNLQYSVMPK
TKKCVEDIDSFIKKFHRDDCGIIYCLSKMDCEKVAEKLKEYGHKAAFYHGGVDPSERAYV
QEQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQLSSCVL
YYNYSDYIRVKHMLSQGASEQSSFSSGYSRTSTTNHGRVLETNTENLLRMVSYCENDVDC
RRLLQLVHFGEKFDSGRCGKTCDNCSKVQSFIEKDCTLIAKQLVELVKLVRQQFSAAHIL
EVYRGSLNQFVKKHRHDSLSLHGAGKHLAKGEASRVLRYLVTEDFLFEDVKKSDAYGSVS
SVVKVNESKVYNLCAGGQTIKLRFPTSTKSSKSGKNDATPAKALLTSGKNSLPLGDSSAQ
SQAESGISAKLYPALRQLRTALINEAGQNVFAHHIYNNATLQQMCKKIPRSKEELLEING
MGEVKVARYGDLLLQTIEATINEHNKTTKISSSSNESTDSGKRRRNRSNNSNENMSNDDV
IDSTGRSKKRALSRPNQPVNIIDYEELADSDLIECVEFMESNIDIENDGSRSNQNSGGRV
LPSWSRTAGN
NT seq 3633 nt   +upstreamnt  +downstreamnt
atggtaaacggaaatctgatgagtagtaagaagcactctactggaggggccataccaggt
gaaaaatgtccaaaacataattggtctcaacatgctgacgcacatgccaacttttcaaac
caaaataagcatctaaggacaaattttttgtattcgctttcgacacataagcctcatatc
gaaggagaaatggcagcgaggtcaatcacctgtcaacttcataatattgaaggagtaaat
agtgcacaagtagaaaaggcttgtcaagctatatccagaattaagctatcttcaaacaag
tacataaaacctggcagaagctcaccactagttaaggatgttggtacgatcccattggga
gatgcaacaagaaaaatccctcaaaatctgggtggtgctaatggcaactttctaggccaa
atgcccccatatataagttccaatgatagtaatacgacgcctgataaacccaagggaatg
gctagttcatatccttctggaattaatggcattgcagaagctggaaaggttgcctgtagg
caaagtaatggtcaagctccaatacataatcattctcatccgaatgtgactgatggatta
tacaaccaatctactcatgcgagtacagtaaacgggtttcagaaacattttcctgatgac
atcgatgatgatgacatacttgggagtcttgatgtggacaagatagttatggaacactac
caatcaagtggcacacctcaaccattaatgtcaaaactcccgtcaattaccccaactggc
agcaaggataataacacaagacctgaagagagttgtttgccaccagagttgtgtgtaaac
tgcagtcatggtttcaagttaggactttgctatgaagctgcaaaacatttgcaaagcatg
aaagatatgctaatttctatctcgaatgatcttctggacaatatcactgacctgaattca
gagcaaatagggaagcttcaccaagatagggcacagctgaaaaagcaaatacagcaactt
gagaaacatcttcataccacatcagtcgaagaagaacgacgaaagtcacaattttctgca
tccacagcttcttcgcgcacaatatattctgaaactccctctgcagctgcatttcatatt
gatcccatgagactagatactcaatttcacatgcgcaatgagcctgatggctttgataga
tggaactcatcgtatggtgtaccaccaactcctgtagagagagaaccatacatcccaaag
tacattgatgttaattatattgagggttcaaatgataaaaaatggagcagtctaagcttt
ccatggacaaaaaagctggaggtcaataacaagacaatatttggaaaccactccttcagg
cccaatcaaagagaggtgataaatgccacaatgagtggacatgatgtatttgttttaatg
cctactggagggggaaagagcctgacatatcagcttcctgcatatatttgcccagggatc
acattggtcatttcccctcttgtttcgcttattcaagatcaaataatgcatttatctcag
gcaaacatacctgctacttatctcagtgccaacatggagtggactgagcaacaagatatt
tttagagagctttgtctcgatagttgtagatacaagctgttatatgtcaccccagagaaa
gtagccaagagtgatgttctgttgcgacacctggaaaagctatattctcgtcaattgctt
gctagaattgtaattgacgaagctcattgtgtgagccaatgggggcatgacttcagacca
gattatcagggtcttggtatcttaaagcaaaagtttccagacacaccggtgctggcttta
actgctacagccacgtcaagtgtcaaggaagatgttgtgcaggctcttggtctggttgat
tgcattatattccgtcaaagtttcaatcgcccaaatttacagtattctgtaatgcccaag
acaaaaaaatgtgttgaagatattgacagcttcattaagaaatttcatcgtgacgattgt
ggaataatttattgtctttcaaaaatggactgtgagaaagttgcagaaaaattgaaggag
tatggacacaaggctgcattttaccacggtggtgtggatccttctgaacgggcatatgtt
caggaacaatggagcaaagatgaaatcaacataatatgtgcaacagtggcatttggaatg
ggtattaataaacctgatgtacgttttgttattcaccattcacttcctaaatctattgaa
ggctaccatcaggagtgtggccgtgctggtagagatggtcagctttcgtcttgtgtgttg
tactacaattacagtgattatataagagtcaaacacatgctaagtcaaggagctagcgag
caaagttccttttcatctggctatagccgtacaagtacaacaaatcatgggagggtactc
gaaacaaacactgaaaatcttctgcgaatggtcagttactgtgaaaatgacgtagattgt
cggcgtttattacaacttgttcattttggagaaaagtttgattctggaagatgtggaaaa
acatgtgacaattgctccaaggttcaaagttttatcgagaaggactgcactctaattgcc
aagcaattggttgagctagtcaagttggtcagacagcagttttcagcagctcatatcttg
gaagtctacaggggatctctaaaccaatttgtaaaaaagcacaggcatgattccttgagc
ctgcatggtgctggaaaacatttagctaagggtgaggcatcccgggtgttgcgttatctt
gtcactgaagatttccttttcgaggatgtaaagaaaagtgatgcgtatggatccgtatca
tcagtggtgaaggtgaatgaaagcaaggtgtacaatctttgtgctggtggccagacaatt
aaattaagattccccacgtcaactaaatcatcaaaatctggtaaaaatgatgcaacaccg
gccaaagctttattaacatcaggaaagaatagccttccattaggggactcgtctgcccaa
tctcaagcagaatcgggcatctcagcgaagctctaccctgctttgagacagcttcgaact
gctctcattaatgaagcaggtcaaaacgtgtttgcacaccacatatataacaatgcgaca
ctgcagcagatgtgcaagaaaatacccagaagtaaagaggagcttctcgagattaatggc
atgggcgaggttaaggtagccagatacggagacctattgttgcagacaattgaagcaact
atcaatgaacacaacaagacaactaaaataagcagcagcagcaatgaaagtacagattct
ggcaagaggagaagaaacaggtccaataactcaaatgaaaatatgagcaatgacgatgtt
atagatagcacaggaagatcaaagaaaagggcgctgagcaggcctaatcaacctgttaac
attattgattacgaggagctcgctgacagcgatctcattgaatgcgtagagtttatggaa
tccaatattgatattgaaaatgatggctcccgttcaaaccagaatagcggaggaagagtg
ttaccttcatggtcaaggacagcaggaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (14)   
   Pfam (14)   
All databases (29)   

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