KEGG   Daucus carota (carrot): 108206665
Entry
108206665         CDS       T05350                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108206665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dcr03021]
    108206665
Enzymes [BR:dcr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108206665
Transcription machinery [BR:dcr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     108206665
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 APOBEC_N
Other DBs
NCBI-GeneID: 108206665
NCBI-ProteinID: XP_017232529
Position
2:42039682..42054757
AA seq 1441 aa
MGHDQEEQVVTTGFVTGIKFDILTEKDAEMISVKEIEVPNDVVHPMLGLPNQTSSQCLTC
EAEDVKTCEGHFGLINLPYTILHPYLISDVAKILNKICVGCKSERSRAKSADSSSTHKKP
THKKRERCKYCDGLRKDEYPRTIFKVSSKEVFGRTAIFAKINDRVFSRIETLASDYWNFL
AEDTQQAGNALKPNERVLSHLQVHELLKEVDPKIVKEFVKDKKDLIFMNNFPVTPNSHRV
NEFGGQVRFDELTRCYRKLANFEGSANELSTRVLDCFKMCKLRSEKVSTKMFNQNEEAAP
NLSGLRFIKELILGKRSDHTFRMVVVGDPRIKVDEIGVPSHIADSMQISEQLNSLNWESL
GLKILRKRDTYIRRDGRLARVTIKDDKLRIGDTVHRPLRDRDIVLINRPPSIHSHSLIAL
SVKILPTNSILSLNPLICSPFRGDFDGDCYHGFIPQSVDSRVELQELVALNKQLTNIQNG
LNLISLTQDSLTAAQLVIEDGVLLNRSQMQQLQMFCPRSCQLQAPAIVKASSRKNCLKAA
SSDTFLWTGKQLFSLLLPQDFSYDCPSSAVKIMKGELISSKTASSWLRDTKGNLLYSLIS
HCQGEFLDFLHAAQGVLSEWLFMRGLSVSLADMYLSSDSHCRKNMIDEVSCGLREAELIS
SVKLLMVDSNLDFLVGSLEESETAMDFGAKHMFCDRQKSPALIQVSVSAFKQVFSKIQNL
FYQYASEDNSFLAMIKAGSKKSNLTKAVQHAMCLGLQHSLVSLSFRIPQELSCEAWNSQK
EEESIDPKDDHSKISKSYIPYAVVQSSFLSGLNPLESFVHSLTTRDASFGGHADISGTLT
RRIMFFMRDLCMGYDGTVRSAYGNQVVQFSYYNNPTSSKNSPEEKLTDGACTMGGQPVGS
WAACAISEAAYSALDLPISALEASPLLNLKEILECGNNKVNKTASLFFSKKLERWTYGFE
YAALEVKSRLERLQFLDIVSTVMIMYSPCREAYVSPWVCQFHINKELAKRKQVKVQSIVK
ALYMKCNSTLVKSKVDLPDLQITCNSDSSEKNMATICINIRMVGIDENSSTQLETLEDMV
LPFLLQTVIKGSSNVKKVDILWKDSSSLSTSHKGASGELYIRVHMSATCDRSRFWTVLMN
DCLQIMDMIDWKRSYPDDIQAATSALGIDFAKSQFINKLASAISDTGKAVLPEHLYLVAD
CLSCTGEFVALSANGLARQRKQTSVSSPFTQACFSSPADCFVNAGKMGMMDNLQGSLDSL
AWGNPPSLGTGAQFDILYSRKDHEVAKPEDIYNLLGSQVGARGQRVKVSRTHTDMSIKNL
AKRSDLLRKDFKAKYFLSMSEELRLILHKYKINQQLSELDESIVVAALFFHPRSSEKIGS
GLKEIKIGGSSKSSTSRCFHVVRTDGTIEDFSYHKCIHNGLKLIAPKSAETYRSRWLNGR
V
NT seq 4326 nt   +upstreamnt  +downstreamnt
atgggtcatgaccaggaagagcaagttgtaacgacggggttcgtgaccggcattaagttt
gatattttgactgagaaagatgcagagatgatatctgtgaaagaaattgaagtacccaat
gacgtggtacatccaatgcttggacttcctaatcaaacttcttctcagtgtctaacatgc
gaggccgaagatgtaaaaacctgtgaaggtcactttgggttgattaatcttccgtacaca
attctccacccatacttgatttcagatgtggcaaagattttaaataaaatctgtgtagga
tgtaaatctgaacggagtagggccaagagtgctgactcatcatcaactcataagaagcca
actcataagaagcgtgagcgttgcaaatattgtgatggactcaggaaagatgaatatccg
agaacaattttcaaagtttcgagcaaagaagtatttggaagaacagccatctttgcaaaa
ataaatgatcgagtgttctctaggattgaaaccttagcttctgattattggaatttcctt
gcagaagatacacaacaagcaggaaatgcattaaaacctaatgaacgagttctatcacat
ctccaggtgcatgaattgctgaaggaagttgatccaaagattgtgaaagagtttgtgaaa
gacaaaaaagatttgatctttatgaacaattttcctgtaactcctaattcccatcgcgta
aatgaattcggaggacaagttagatttgatgaactcactaggtgttacagaaagctggca
aattttgaaggttcagctaatgagttgagtactcgtgtcctagactgcttcaaaatgtgc
aagctacgatcagaaaaagtgtcaaccaaaatgtttaatcaaaatgaggaagctgcccca
aatttatctggtctgaggttcatcaaagaacttattttgggaaaacgatctgatcatact
ttccgcatggtcgttgtgggtgatcccagaataaaagtggatgaaatcggtgtcccttcc
catattgcagactcaatgcaaatatccgagcagctgaattcactaaattgggaaagtctg
ggtttaaagattttgaggaaaagggacacatatattcgtcgagatggtaggctggctcgg
gtcacaataaaagatgataagttgcggattggggacactgtacacagacctctccgtgat
agagatattgttctgatcaataggccaccatctattcattctcattcactaattgcgcta
tctgttaaaattcttccgacaaattccatcctctctctcaatccattaatttgctcccct
tttcgtggggattttgatggtgactgctatcatggttttattccacaatctgtcgactcc
agagtagagctccaggagctggttgctttgaacaagcagttaactaatattcaaaatggt
ctaaatcttatatcactaacacaagatagtttaactgccgctcagttggttattgaggat
ggagtgcttttgaaccgttctcaaatgcagcagctgcaaatgttttgtccaagatcttgt
cagctgcaggctccagccattgtcaaggcatcttcacgtaagaattgtttgaaagctgct
tcttcagataccttcctgtggacaggcaaacagttattcagcctgctccttcctcaagat
ttttcttatgattgtccttcaagcgctgttaagataatgaaaggggaacttatatcttcc
aaaactgcatcttcttggctacgtgataccaagggaaaccttctctatagccttataagc
cactgtcagggggagtttcttgacttcctacatgctgctcagggagttttaagcgaatgg
ttgtttatgcggggactaagtgtttcactggctgacatgtacctctcttctgattcacac
tgccggaagaatatgattgatgaagtttcatgtggtttgcgggaggctgagctgatatca
tctgtaaaattattgatggtggattcgaatctggattttcttgttggaagccttgaagaa
agtgaaactgctatggattttggagctaagcacatgttctgtgaccgacagaagtcacct
gctctcattcaagtatctgtttctgcattcaagcaggtttttagtaaaattcagaactta
ttttaccaatatgcgagtgaagacaattcttttttagccatgataaaggctggaagcaag
aagagtaaccttactaaggctgtccagcatgcaatgtgccttggtttgcagcattcattg
gtttcactttcttttagaattccccaggaactttcttgtgaggcatggaatagtcagaag
gaagaggaatcaatagatccaaaagatgatcattcgaaaatttccaagtcatacattcct
tatgcagtggtgcaaagttctttcctctcgggattgaacccattggagagtttcgttcac
tcattgacaacacgagatgcttcttttggtggtcacgcagatatatctggtacattgact
cgaaggataatgtttttcatgcgtgacttgtgcatggggtatgacgggacagtgagaagt
gcctatggcaaccaagttgttcaattttcatattataataaccccacttcttcaaaaaat
agtccggaggagaagctgacagatggtgcctgcacaatgggtggccaacctgttggttcc
tgggctgcttgcgcaatatctgaagccgcatatagtgctctggacctaccgatcagtgca
cttgaagcctcacccctgcttaatttgaaggaaattctagaatgtggcaacaataaggtg
aacaaaacagcatctttattcttttcgaagaagcttgaaagatggacctatggttttgaa
tatgcagccttggaggttaagagtcgtttagagagactacaatttttagacattgtttct
actgtcatgataatgtactccccttgtagagaagcttatgttagtccatgggtttgccaa
tttcatataaacaaggaattggcaaagagaaaacaagtaaaagtccaatctatagtcaaa
gcactctacatgaagtgtaattccaccctagtgaaatcgaaggtggatcttccagatttg
cagattacatgcaacagtgacagttccgagaaaaatatggccacaatttgtatcaacatt
agaatggttggtattgacgagaactccagtacacagctggagacacttgaagacatggtg
ttacctttccttcttcaaactgtcataaaaggatcttcgaatgtgaaaaaggtggatatc
ttatggaaagattcttcaagtttatcaacttcgcataagggtgcatctggtgagctgtat
attcgagttcacatgtcagccacctgtgacaggtcgagattttggactgtcctcatgaat
gactgcctccagattatggatatgattgattggaagcggagttatcccgatgatattcag
gctgcaacctctgcccttggaattgattttgcaaaatcgcagtttataaataaattggca
tcggcaatatctgatactggaaaggctgtacttcccgaacatttatatcttgttgctgat
tgtctttcatgtacgggggaatttgttgctttgagtgcaaacggactggcacgacaaagg
aagcagacatcagtttcttcaccatttacgcaagcatgcttttccagtcctgcagattgc
tttgttaatgctgggaagatgggcatgatggataatctacagggtagtctagattcactg
gcatggggaaaccctccttctctagggactggtgcccagtttgatatcctatactctagg
aaggatcatgaagtggctaaacctgaagatatctataatttgttgggtagccaagttggt
gctcgtggacagagagtcaaggtatctcgtacacacaccgatatgtcaatcaaaaatctt
gccaagagaagtgacttgctgagaaaggatttcaaagcaaaatactttctatcaatgtct
gaagagctgaggcttatattacacaagtataagataaatcaacagttaagtgagttggat
gagagcattgtggtggctgcactattttttcaccctcgatcttctgaaaagattggaagc
gggcttaaagaaatcaaaattggtgggagctcaaaaagctcaactagccgctgctttcat
gtggtaagaactgatggtaccatcgaggacttctcgtatcacaaatgtatacacaacggt
ctcaagctgattgctcctaaaagtgcggaaacataccggtcaaggtggttgaatggaaga
gtctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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