KEGG   Daucus carota (carrot): 108210556
Entry
108210556         CDS       T05350                                 
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X1
  KO
K08736  DNA mismatch repair protein MSH3
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    108210556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108210556
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     108210556
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II MutS_IV Bul1_C
Other DBs
NCBI-GeneID: 108210556
NCBI-ProteinID: XP_017237378
Position
3:complement(6902024..6910058)
AA seq 1103 aa
MGKQKQQVISRFFAPNPKTPSNPTPSSPPPPPKISTTVNFSPAKRALNSQFISSTKPPKT
PKLSPHTHNPIPSLHQRFVEKLLEPSQDLLEPSGESSLVGPSVKYTPLEQQVVELKRKYP
DVLLMIEVGYKFRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVYVRRLVGAGYKV
GVVKQTETAAIKAHGSNRLGPFCRGLSALYTKATLEAAEDVGGGEEGFGSCSNYLVCVVE
NVDIGGIESGCDSKIGIIAVEISTGDVIYGEFDDNFMRSALEALLLRLSPAELLLAEPLS
KQTEKLLSSYAGPTSNVRVEHISRDSFNQGSALAEVMALSDNKSDSQLVKNLHKETEVET
EAADCSTNEGIVDMPDMVVQALALTIRHLKQFGFEKILCSGASFRPLSGSMEMTLSANAM
QQLEILRNNIDGSESGSLLQCMNNTLTISGSRILRHWVTHPLCDRNMIHSRLDAVSEIAE
SMGSYKASQSINCDEEDSNVTIVCPKLHQVLSSVLTFLGRSPDIQRGITRIFHRTATTSE
FIAIIKAILVAGKQLHELHVEEEGRNTIVGKNIVHSVLLRKLVLTASSSRLIGIAAKLLS
SLNKDAAEKQDLQNLFISTDGQFSEVGEARTKVQCAKEKLDLLINSYRKQLGKRNLEFTS
VLGTTHLIELPADVKVPSNWVKVNSTKKTIRYHPPEVSTALDQLSLVTEELTHICRAAWD
NFLKEFGRYYSEFQAAVEALASLDCLHSLAVLSRNKGYVRPVFVNDNDPVQISVRSGRHP
VLESILQDSFVPNDTNMHSDGEYCQIITGPNMGGKSCYIRQVALIAIMAQVGSFVPACSA
SLHVLDGIYTRMGSSDSIQQGRSTFLEELSEASNILHSCSPRSLVIIDELGRGTSTHDGV
AIAYATLQYLLEEKRCMTLFVTHYPKIVDIKTQFPRAVGAYHVSYLTSKKDPSTDRNNDQ
RVDTMNYEDVLYLYKLVPGVSKSSFGFKVAQLAQLPASCISQAISMAVKLEAAVSNRRKN
RLACNHSNESASPDNEAKHAPKRLTEHIEDTCAEETEDLEELCTVFREIFLNINLASSVD
GDLEKCFQLLNHARGLALELINR
NT seq 3312 nt   +upstreamnt  +downstreamnt
atgggcaaacagaaacaacaagtgatttctcgcttctttgcaccaaaccccaaaacccca
tcaaaccctactccctcttctccacccccacctccaaaaatctcaactactgtcaatttc
tcaccagccaaacgcgcccttaactcccagttcatttcttccactaaaccccccaaaacc
cctaaactctctcctcatacccacaaccccattccatctcttcaccaaagatttgtggag
aagcttttagaaccttctcaggaccttctagagccttctggggagtcgtcacttgtgggc
ccttctgttaagtacactcctctggaacagcaagtggtggagcttaaaagaaagtaccct
gatgttctgttgatgattgaagttggttacaagtttcggtttttcggacaggatgctgag
aatgctgctagggttttggggatttatgctcatatggatcataattttttgactgccagt
gtgcctacttttaggttgaatgtttatgttaggaggcttgtgggggccggttataaggtt
ggagttgttaaacagactgaaactgcggcgattaaggctcatggttcgaatcggttagga
ccattttgcagggggttatcggcattgtacactaaagctacattggaggcggctgaggat
gtgggtggtggagaagaagggttcggttcgtgtagtaattatttggtttgtgttgttgag
aatgtggacattggggggattgaaagtggatgtgattcgaagattggaattatagcggtt
gagatttcaaccggagatgttatttatggggagtttgatgataattttatgaggtctgcg
cttgaagcgttgcttttgagattgtcacctgcggagttacttcttgcagagcccctctca
aaacagactgaaaagttactatcatcatatgctggtccaacgtcaaatgtccgggtggag
catatatcacgagattccttcaatcaaggtagtgcacttgctgaagtaatggcattgtct
gataacaagagtgatagtcagctagtaaaaaacttgcacaaagaaacagaggtggaaaca
gaggcagctgactgctcgacaaatgagggaattgtagatatgcctgacatggtggtccaa
gcattagccttgaccattcgtcacctgaagcaatttggttttgagaaaattttgtgctcc
ggagcttcatttcgacccttgtccggtagtatggaaatgactctgtctgccaatgctatg
caacaattagagattttgaggaataatattgacgggtctgagtctggctccttgctgcaa
tgtatgaataacacacttaccatttctggatcaaggatcctgaggcactgggtgactcac
cctttatgcgacagaaacatgatacattctcgtcttgatgctgtgtctgagattgctgaa
tccatgggttcatacaaagcttctcaaagtattaactgcgatgaggaagactctaatgtt
actattgtgtgccccaaattacatcaggttctttcttcagttttgactttcttaggaagg
tcacctgatattcagcgtgggattacaagaatatttcatcgaacagcaacaacatcagag
ttcattgctattattaaagccatcttagttgctgggaagcaacttcatgagcttcatgtt
gaggaagaaggtcgtaacacaatagtagggaaaaacattgtgcactctgtgttgctaagg
aaattagttttgacagcttcatcatccagattaattggtattgctgcaaaacttttgtca
tccctgaacaaggatgctgctgaaaaacaggatcttcaaaatttatttatcagtactgat
ggacaattctcagaggttggtgaagcgagaacaaaagtccagtgtgcaaaagaaaaattg
gacttattgattaattcctaccgcaaacagcttggtaaacgcaatttggaattcacaagt
gttttagggacaacacacttgattgagttgcctgcagatgtgaaagttccttccaattgg
gtaaaagtgaatagtacaaaaaaaactatacgttatcatccacctgaagtctcaactgct
ctggaccagctgtcactagtcactgaggaactcactcacatctgccgagctgcttgggat
aattttcttaaagaatttggcagatactattctgagttccaagctgctgttgaagcacta
gcttctttggattgcttacattcacttgccgttctttcaagaaataagggttatgttcgt
ccagttttcgtgaatgataatgatcctgttcagatatctgtccgttctggtcgtcaccca
gttcttgagtctatattacaagatagttttgtcccgaacgatacaaatatgcattctgat
ggtgagtactgtcagatcattacaggaccaaacatgggtggaaagagttgctatattcgc
caagtcgctctcattgctattatggctcaggttggctcattcgtaccagcgtgttctgca
agtttgcatgtgttggatggcatttacactagaatgggatcttctgacagtattcagcaa
ggaagaagcacctttttagaagaactgagtgaggcttctaacatactacacagctgttca
cctcgctcgttggttatcattgatgagctcggaagaggcactagcacacatgatggagta
gcaattgcttacgctacgttacagtatctacttgaggagaaaagatgcatgactttgttt
gtcacccattacccaaaaattgttgacatcaagactcagtttcccagagctgtaggagct
taccatgtttcatatctgacgtctaagaaagatccatctacagatagaaataatgatcaa
agagttgacaccatgaactatgaagatgtgctttacctttataagcttgtaccaggtgtt
tccaagagtagctttgggtttaaagttgctcagcttgctcagctacctgcttcatgtatt
agtcaagctattagcatggctgtaaagcttgaagcagcagtaagcaacagaaggaagaac
aggctggcatgcaatcactcaaacgaatcggcttcaccagataacgaagcaaagcatgca
ccaaagagactgactgaacatattgaagatacctgtgcagaagaaactgaggacctagag
gaactttgtacggtcttcagagagatctttttgaatataaatttagctagttcagtagat
ggtgatcttgaaaagtgttttcaactattgaaccacgctagaggtcttgcattggagttg
atcaatagatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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