KEGG T05350: 108214228

Daucus carota (carrot): 108214228

Entry

108214228         CDS       T05350

Name

(RefSeq) dicer-like protein 4 isoform X1

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

dcr Daucus carota (carrot)

Brite

KEGG Orthology (KO) [BR:dcr00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dcr03036]
    108214228
Chromosome and associated proteins [BR:dcr03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    108214228
   microRNA pathway
    RISC loading complex
     108214228

SSDB

Motif

Pfam:

DND1_DSRM Ribonuclease_3 Ribonucleas_3_3 dsrm Dicer_dimer Helicase_C DEAD ResIII

Other DBs

NCBI-GeneID:

108214228

NCBI-ProteinID:

XP_017241586

Position

3:complement(1582497..1604600)

AA seq 2024 aa
MASGDSNSEDHQDFDVKDPTLIAREYQTKLCQKALSENTIAYLGTGCGKTHIAVLLIHEM
RHLIKKPQNNICVFLAPSVALVEQQAKVIKDSIDVKVGIYCGSSKHLKRHTYWEKELAQH
EVLVMTPPVLLQNLSHCFIRIELIALLIFDECHHAQPESNHPYAEIMKVFYNTSATKLPR
VFGMTASPILGKGASIRGLESLLHAKVYSVEDKEELERFVTPPKVSVYYYDTAADGPSSP
LVYSSKLQAIKSQCVSTLVENISDMDSLISSKKMLQKLHTNLCLCVEKLGVWGACQAAQI
LSKGDCLVQNELMEMEVQNSHVSICNSYLSQAAMIFLSDCKKDRTKEKLNSPEVLEEPFF
SKKLLQLINILTNFRSQQNMKCIIFVDRIVTAISLSSILQSLQFLSAWKSDFLVGVNSGL
KRVSRKSTNALLAKFQSGEINLLVATKVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRA
RMPQSEYAFLVDSGNEKEQNLIDSFTEAEDKMNEEIEFRTSTATFCDIEEKTYRVELTGA
TISSGSSISLLYRYCSKLPHDEFFKPKLEFSYFDEADGTVCQIIFPSNAPIYQLSSAPQS
SKDAAKRDACLEACKQLHQLGALTHYLLPERDDENEDLESSSDSDCSDDEDTRRELHEML
VPAVLKEPWSEAEDSVHLRSYFVKFRPHPPDRDYRPFGLFVKASLPGDAERMKLDLHLAR
GRSVATELVPFRTLLFSRDQLALAEKFQEMFLKVIIDRSQFCSEFVPLGRINSDILAPRT
YYLMLPVICYEFEEAMVVDWNLVMKCLSSPIFNMPEVAKANELPQPSEKLHLANGPKSVN
DVVNSLIYVPSKKLFYFVSDVLSEKNAYSDYKASKSHVHHFSERFGVHLLHPKQALLKAK
QLFSLENLLRKKGNLASHAEPREKEEHFVELPPEICELKIIGFSKDVGSSLSLLPSVMHR
LESLLVAVELKHLLSVSFPEGAEVSASRVLEALTTEKCNEHFSLERLEVLGDAFLKYAVG
RRLFVLHDALDEGQLTRKRSSVVNNSNLLKLAIANRLQVYIRDQSFDPCQFFALGRPCSV
VCKSETEKTIHSSQCSRAANLHMELRCTKSHHWLHKKTIADVVESLVGAFIVDSGFKGAA
AFLNWMGIQVEFEGSKVSHICSASSIYLPLAAQIDIAALEDSIGYQFNNKGLLVQAFVHP
SYTYHSGGCYQRLEFLGDAVLDYLITSYLYSVYPNLKPGQLTDLRSTCVNNISFANIAIR
RSFYKYIISESSGLCKSMEKYVMFSRTHQLTGNLVEAPPCPKALGDIVESCIGAILLDTG
FNLNHVWKTMLSFLDPVIHFSGLQLNPIRELQELSQSYNMELKFASSKKDNTYTVEIKVN
GKDVCEHSSASNFSKKAAKRRAAKQLILILKEHGYKSKSKSLEEVLKLTHKMEAKLIGYN
EAPTDVNDPYATIAYNEKTPTDVSAPFATIAYNEKTPTDVSAPFATIGYNEKTPTDVSAP
FATIGNNETPTNVSTPYARGFDILKVQDSCTSGSSSSKVNPLGVQLHRSGGIKINPIMQK
SSLCDTREYQTTDKKDSDNCSSDSQNPGRSVKKSAKSLLFEICAANGWKPPIFVCCKETG
ADHLKEFTFTVIVKPDSLEKCFIEAIGKPAGKKKEAAEHAAEGAVWLLRERYGVSKAKPG
LSYFADAEGTVCQKVLPSDPPISQVLCDTQSSQEACKQLPEQDDATEDLKTSTDSNCLND
DNTRRELDKILVPTVLKEQWSNSEEVSSFRDARECQLIGKKDDSCCSGSVTPGHSMKKSA
TSILFEFCAANRWKPPLFVCCKETGASHLKEFTYKVIVKPDGLEKCLIEAIGKPAGKKKE
AATHAAEGAVWLLREHFGVCMPNLELSSKVHPLGGEPYRSEGSKIKQTGQMSSFHETREC
QQIVKQVDDCRSSDSQTAGCSMKKSSKSQLFEICAANRWKPPIFVCCKETGASHLKEFTY
KVIVKPDSVEKCIIEAIGRPAGKKKEAAENAAKGAVWLLKDHLL

NT seq 6075 nt +upstreamnt +downstreamnt
atggcctccggtgactccaactccgaggatcatcaagattttgatgtgaaagaccccaca
ctcattgccagagagtatcagacaaaactgtgtcagaaagctttgagtgaaaacacaata
gcctatttgggaactggttgtgggaagactcacattgctgttctattaattcatgagatg
cgacacttgataaagaaaccccagaataacatatgtgtctttctagctccttcagttgct
ctggttgagcagcaagccaaagtcatcaaggactcaattgatgttaaagttggcatctac
tgtgggagttctaagcatttgaagcgtcatacctattgggagaaagaattagcacaacat
gaggttcttgtcatgacccctccagtacttctccagaatttatcgcattgcttcatcagg
attgaattgattgcgcttctaatttttgatgagtgccatcatgcgcaacctgagagcaat
catccttatgctgaaatcatgaaggtattttacaataccagtgcaacaaagcttcctcgt
gtatttggtatgaccgcatctccaatattgggaaaaggtgcttctatccgtggcctcgag
tctttactacatgctaaggtttattctgttgaagacaaggaagaactcgaacggtttgtg
acacctcccaaagttagtgtatattattatgatacagcagcagatggaccatcttcccct
ctagtttattctagtaaactgcaagcgataaaatcccagtgtgtatcaacactggtagag
aatatcagcgacatggatagcctaataagctccaaaaagatgctccagaaactgcacact
aatctgtgtttgtgtgtagagaaacttggtgtttggggagcatgtcaggctgctcagata
ctctcaaagggtgactgccttgtgcaaaatgaactaatggagatggaagtgcagaattcg
catgtctctatatgcaacagctatctttctcaagctgccatgatatttttgtcggattgc
aaaaaagatcgaaccaaggagaagttaaattcaccagaagtcctagaggagccctttttc
tccaaaaagctcttgcaacttattaacatccttaccaatttcaggtcccagcaaaacatg
aaatgtataatttttgtcgatagaattgtaactgccatatctttgtcgtctatacttcaa
agccttcaatttctatcagcttggaaatctgattttttggtcggagtcaactctggacta
aagcgtgtgtcacgaaaatctactaacgctttgcttgctaaatttcaatccggtgagata
aatctattggttgcaactaaagttggggaggaaggtcttgatattcaaacgtgctgcctt
gtagtaaggtttgatcttccggaaactgtagccagtttcatacaatctagaggacgtgct
cgcatgcctcagtcagaatatgcatttctggtagacagtggcaatgagaaggagcaaaat
cttattgacagttttactgaagctgaggataaaatgaatgaagaaattgaattcagaaca
tctactgccactttttgtgatattgaggagaaaacttatagagtagaattgacgggagcc
acaatcagttctggaagtagcatttcattgctttaccgctattgttcgaaacttccacat
gatgaattttttaagcccaagctggagttctcatacttcgatgaggcagatggaacagtc
tgccagataatttttccctccaatgctccaatttatcaactgtcaagtgctcctcaatct
tctaaggatgcagcaaagagagatgcgtgcttggaagcatgtaagcaattacatcaattg
ggtgctctaacccactatctcttgcccgaacgagatgatgaaaatgaggacctggaatct
tcatcagattcagattgctctgatgacgaggatacgagaagagaattgcatgaaatgctt
gttcctgctgtcctcaaagagccgtggagtgaggccgaggattctgtccacctcaggtcc
tactttgtgaagtttagaccccatccaccagatagggattatagaccatttggtctcttt
gtaaaagcatctcttcctggagatgctgaaagaatgaaactagaccttcatttggcacgt
ggtagatctgtagcaacagagcttgtaccatttagaactctgctatttagtagagatcag
ctagctttggccgagaagtttcaggaaatgttcctcaaggtcatcattgacagatcacag
ttctgttctgaatttgttcccttgggaagaattaattctgatatattggctcctagaaca
tattacctcatgcttcctgtaatctgctatgaatttgaggaagcaatggttgtggactgg
aaccttgtcatgaaatgtttatcgtcgccgatatttaacatgccagaagttgctaaggct
aatgagcttcctcaacccagcgagaaattacatctcgctaatggtcctaaaagtgtcaat
gatgttgtgaatagcttgatttatgtaccaagcaagaaattgttctattttgtttctgat
gttttgtcagagaagaatgcatacagtgactataaagcatcaaaaagtcacgttcaccac
ttctctgagaggtttggcgttcatcttttacatcctaaacaagctcttttaaaagcaaag
cagctctttagtctggagaacttactacgaaagaaaggaaatttggcatctcatgcagaa
ccacgagaaaaagaggagcactttgttgaattacctcctgaaatttgtgaattaaagata
attgggttttcgaaagatgttggaagttcattatctttgttaccatcagtcatgcatcgt
ctggaaagcttgcttgttgctgttgaactaaaacatttactttctgtctcatttcctgag
ggagctgaagtatctgcttctcgtgtccttgaagcacttactactgagaaatgcaatgaa
cacttctctcttgaaaggctcgaagttcttggtgatgcattcctcaaatatgcagttggc
aggcgtctttttgtcttgcatgatgccctagatgagggacagcttacaagaaaacgttca
agtgtcgtcaataactccaatttactgaagctagcgatagcaaacagattacaggtatac
atacgcgaccaatcatttgacccatgccaatttttcgcattgggtcggccttgttcagtt
gtttgtaaatctgaaacggaaaagactatccattcatcacaatgtagtagggctgcaaat
ctccatatggaattaagatgcactaaatctcatcactggttgcataagaaaaccatagcc
gatgttgtggaatctcttgtcggtgcatttatagtcgacagtggcttcaaaggtgcagct
gcttttcttaattggatgggtatacaagtggaatttgaaggttcgaaggttagccatatc
tgttcagcaagttcaatctatttaccacttgctgctcaaatagatatagctgctcttgaa
gattctatcgggtatcaatttaacaataaaggtttgcttgtgcaagcttttgtccatcca
tcatatacctatcattccggaggctgttatcagagactggagtttctaggagatgctgtg
ctggattatctaatcacttcctatctctattcagtctatccaaacctgaagcctggccag
ctgaccgatttgagatccacatgtgtcaacaatattagctttgctaacattgcaatacgt
cggtcattctataaatatattatttccgagtctagtggcctctgcaaatccatggagaaa
tatgtcatgttttctagaacccatcagcttactggaaatttagttgaagcgcccccatgc
cccaaagctcttggtgacatagtggagtcatgtatcggtgccattcttctggacacggga
ttcaatttaaaccatgtttggaaaacaatgctctcctttctcgatccggtcattcacttt
tccggattacagcttaatcccattcgagaacttcaagaactaagtcaatcgtacaatatg
gaattgaaatttgcatcttcaaagaaggataatacttatactgttgaaataaaggtgaat
gggaaagatgtttgtgaacattctagtgctagcaacttcagcaaaaaagctgccaagaga
agggctgcaaagcaattaattctgattttgaaggagcatggttacaaatcaaagagtaaa
tcgttagaggaggttttgaagttgacccacaagatggaagcaaaattaattggttacaat
gaagcaccaacagatgttaatgatccatatgccacaattgcttacaatgaaaaaacacca
acagatgttagcgctccatttgccacaattgcttacaatgaaaaaacaccaacagacgtt
agcgctccatttgccacaattggttacaatgaaaaaacaccaacagatgttagcgctcca
tttgccacaattggtaacaatgaaacgccaacaaatgttagcactccatatgccagagga
tttgatatcttgaaggtgcaggattcctgtacaagtggttcttcatcatccaaagtaaat
ccactcggtgtacaactgcatagatctggaggcatcaagattaacccaattatgcaaaaa
tcatctctctgtgacactcgtgaatatcagacaacagacaaaaaagatagtgataactgc
tctagcgattctcagaatccaggtcgttcagtgaagaagtcagcaaagtcacttttgttt
gaaatttgtgcggccaacggttggaaaccacctatatttgtatgctgcaaggagacaggg
gcagatcacttgaaagagtttacttttacggtgatcgtgaagcctgatagtttggaaaaa
tgtttcattgaagcaatcggaaaaccagccggtaaaaagaaagaagctgcagagcatgca
gctgaaggggctgtttggctgttgcgagaacgttatggagtttcaaaagccaagccgggg
ttgtcttactttgctgatgcggaaggaactgtttgccaaaaagttcttccttccgaccct
ccaattagtcaagtgttgtgtgacactcaatcttctcaggaagcatgtaagcaattgcct
gaacaagatgatgcaactgaggacctgaaaacctcaacagattctaattgccttaatgat
gataataccagaagagaactcgataaaattcttgtccccactgtacttaaagagcaatgg
agtaattcagaggaagtgtcatcttttcgtgacgctcgtgaatgccagctgataggaaaa
aaagatgacagctgctgtagtggttctgtgactccaggtcattcaatgaagaagtcagca
acgtcaattttgtttgaattctgtgctgcaaatcgttggaaaccgcctctatttgtatgc
tgcaaggagacgggggccagtcacttgaaagagttcacatataaggtaattgtgaagcct
gatggtttggaaaaatgtttgattgaagcaatcggaaaaccagctggtaagaagaaagaa
gctgcgacgcatgcagctgaaggggctgtttggttgttgcgagaacattttggagtttgt
atgcccaatctagagttatcatccaaagtgcatccacttggtggagaaccgtatagatct
gaaggcagcaagatcaaacagaccgggcaaatgtcgtcttttcatgagactcgcgaatgc
cagcaaatagtaaaacaagtcgatgattgccgctctagtgattctcagactgcaggttgt
tcaatgaagaagtcatcaaaatcacaattgtttgaaatctgtgctgcaaatcgttggaaa
ccacctatttttgtatgctgcaaggagacgggggccagtcacttgaaagagttcacatat
aaggtgatcgtgaaacctgacagtgtggaaaaatgtatcattgaagcaatcggaagacca
gcaggtaaaaagaaagaagctgcggagaatgcagctaaaggggctgtttggctcttgaaa
gatcatcttttgtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

Download RDF

DBGET integrated database retrieval system