KEGG   Daucus carota (carrot): 108216431
Entry
108216431         CDS       T05350                                 
Name
(RefSeq) ribosomal RNA small subunit methyltransferase NEP1-like
  KO
K14568  rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    108216431
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dcr03009]
    108216431
Enzymes [BR:dcr01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.260  rRNA small subunit pseudouridine methyltransferase Nep1
     108216431
Ribosome biogenesis [BR:dcr03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    108216431
SSDB
Motif
Pfam: EMG1
Other DBs
NCBI-GeneID: 108216431
NCBI-ProteinID: XP_017244679
UniProt: A0A165W984
Position
4:complement(13179939..13182677)
AA seq 284 aa
MVRPYGVKGRKRKKNREVYDKEEEEVHEEGNEVVDDEENVTKRSKAEEDEDEAKAQHVAD
ELSGIPIGPLVEDDKKNGVIFILERASLEVAKVGKTYQLLNSDEHANFLKRNNKNPADYR
PDIAHQAMLMILDSTLNKAGKLKALYVRTEKGVLFEVKPHVRIPRTYKRFSGIILQLLQK
LSISAVGKREKLLRVVKNPVTQYLPVNSRRIGFSHSSEKLVDIGDYVNAVSNDVNLVFVV
GAMAHGKIEKEFVDDFISISGYPLSAAYCISKITNALERKWKIL
NT seq 855 nt   +upstreamnt  +downstreamnt
atggtgagaccttatggtgttaaagggaggaagcgaaagaagaatcgtgaagtgtacgat
aaagaagaagaagaagtacatgaggaaggaaatgaggttgtggatgatgaagaaaatgtg
acgaagagaagtaaggcagaagaagatgaagatgaggcgaaagctcagcatgttgctgat
gaactttctggtattccgattggcccattggtcgaggatgataagaagaatggtgttatt
tttattcttgaaagagcttctttggaagttgctaaagttggcaagacttatcagttactc
aactcggatgaacatgctaattttctaaagagaaataacaaaaaccctgctgattatagg
cctgacattgctcatcaggctatgctaatgattttagatagcacactgaataaggctggg
aagttgaaggcgctatatgtgagaactgagaaaggtgtgctttttgaagttaaaccacat
gttcgtataccaaggacgtataagcgtttctcggggatcatcttacagttgctgcagaaa
cttagtatatctgctgtgggcaagcgtgaaaagcttctgcgtgtcgtcaagaaccctgta
acccagtatttgcctgtaaactctcgcagaataggtttctcacatagttcagaaaagttg
gttgacattggggactatgttaatgctgttagcaatgatgtgaaccttgtctttgtggtt
ggtgcaatggcccatgggaaaattgaaaaggagtttgtagacgattttatatcaatttct
ggctacccattgagcgcggcatattgtatatcaaagatcacaaatgctttggaacggaaa
tggaaaattttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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