KEGG   Daucus carota (carrot): 108219994
Entry
108219994         CDS       T05350                                 
Name
(RefSeq) tRNA pseudouridine synthase A, mitochondrial-like
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dcr03016]
    108219994
Enzymes [BR:dcr01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     108219994
Transfer RNA biogenesis [BR:dcr03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    108219994
 Prokaryotic type
    108219994
SSDB
Motif
Pfam: PseudoU_synth_1 DUF1638 DUF2138
Other DBs
NCBI-GeneID: 108219994
NCBI-ProteinID: XP_017249104
Position
5:7308674..7314170
AA seq 417 aa
METPAESHPEEPTSKKLKTSPSYKTPKYKRRKIALFFGYCGAGYQGMQKNIGAKTIEADL
EEALYLSAAIPEQDRGHPKRLDWSRSARTDKGVSAVCQVVSGSFYIDPPGLIERLHRHLS
SQFRVFGYKRVAPSFSAQRFCDRRRYVYLLPVFVFDLRRVLSNCESGNVVEGECDVDRFC
YGEEEKERFNRILKCYEGTHNFHNFTTRIKAEDPSSQRFIVSFSASDTVVVDGIEFVKCQ
VVGQSFMLHQIRKLIGFAVLVMRNIVPESLIKIALQKDVNITVPTAPEVGLFLDECFFTS
YNKKWKEVHGELSMKDYEKEAEEFKMKHIYSHIALTERKDRVVGLWLQSLNHENYSELSV
ASSSKIANLKDSEVRRTTNDKSSELEIAADLKSPEAKVTTDALALKLKTAEVEVVVD
NT seq 1254 nt   +upstreamnt  +downstreamnt
atggaaaccccagccgagtcacatcccgaagaacccacttcaaaaaaactcaaaacatcc
ccctcttacaaaacccccaaatacaagcgccgcaaaatcgccctcttcttcggctactgc
ggcgcaggttaccaaggaatgcaaaaaaacataggggccaaaacaatcgaagccgatctc
gaagaagctctctatctctccgccgctattcctgaacaagaccgtggtcatcccaaacgt
ttggactggtctcgctctgctcgcaccgataaaggcgttagtgctgtctgccaagttgtt
tccggcagtttttacattgacccacctggactaattgagcgccttcaccgccatttatct
tcgcagtttcgagttttcggttacaagcgtgtggctccttcgtttagtgctcagaggttt
tgtgataggcggcggtatgtttatttgcttcctgtgtttgtatttgatttgaggcgtgtt
ttatcgaattgcgaaagtggcaatgtggtggagggggagtgtgatgtggataggttttgt
tatggggaggaggagaaagagaggtttaataggattttgaagtgttatgaagggacgcat
aattttcataattttacgacgaggattaaggctgaggatccgtcttctcagcgttttatt
gtctcgtttagtgctagtgatactgttgttgttgatggtattgagtttgttaagtgtcaa
gttgtaggacagagttttatgcttcatcagattagaaagttgattggttttgcggttttg
gtgatgaggaatattgttcctgaatcgttgattaaaattgctcttcaaaaggatgtaaat
attactgtgcctacggctccagaagttggattatttttggatgagtgcttctttacatcg
tacaacaagaaatggaaagaagttcatggagaactgtcaatgaaagattacgagaaggaa
gctgaggaatttaagatgaagcatatatattctcatattgctctgacagaacgtaaagat
agagttgttggcctttggctgcaatcactgaatcatgaaaattatagtgaattaagtgta
gcgtccagtagcaagattgctaatttgaaagattctgaagtgcggagaacaactaacgac
aaaagttctgaacttgaaattgctgctgatttgaagagtcctgaagccaaggtaacaact
gatgccctggcgctgaaattgaagacagctgaagtggaggtcgtggtggattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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