KEGG   Daucus carota (carrot): 108220541
Entry
108220541         CDS       T05350                                 
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
  KO
K03678  exosome complex component RRP45
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108220541
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108220541
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     108220541
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 108220541
NCBI-ProteinID: XP_017249828
UniProt: A0A162A3C0
Position
5:complement(24017234..24022730)
AA seq 449 aa
MEQRLSNTWRMTINEKKFIKTSLLADLRVDGRRPFDYRRLIIKFGSEDGSSEVQLGQTHV
MGVVTSQLVQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGESAVELGRIIDRGLRESMA
VDTESLCVVTGKLVWSIRIDIHILDNGGNLVDAANIAALAALSTFRRPECTLGGEDGQEL
IVHPPEVREPVPLIIHHLPIAVTFGFIGEENIVVIDPTYFEEAVMGGSMTATLNTNGDVC
AIQKAGGVGVLPSVIMQCLRLASVKAGDITNIIKNAVKSFNTERSLRKIKRHNSSVIDVS
ETAQKVDVKFSTNHVNRLKLSEDSRVAQGNGMEVDGQISQKEGTSKRDSSAKSFIGGPSS
WDPHSKGIDPDALRASFASRVVLAPTEKLEDSKVDEPTDIEPNQPIVDDNSYISPKEATN
TKSKTNEEKTLIDAIKPKHRRRRKASSQH
NT seq 1350 nt   +upstreamnt  +downstreamnt
atggagcaaagattatctaatacatggcgtatgacaatcaatgagaagaaattcatcaaa
acctcgttgcttgctgacctaagagttgatggtcgccgcccttttgactatagacgtctc
attatcaagtttggaagtgaagatggctcgtcggaggtgcaactaggccagactcatgtt
atgggagttgtgacttcccaacttgttcagccgtatcgagataggcctaatgaagggacg
ctttcgatatatactgagttttcgccgatggctgatccttcgtttgaggctgggaggcct
ggagagtctgctgtggagttggggcgtattatagaccggggtttaagggaaagcatggcg
gtagacacagagtcactttgtgttgttaccgggaagttagtgtggtccattcgcatagac
attcacattctagacaatgggggaaatcttgttgatgctgccaacattgccgcactagct
gctttgtcaacattccggaggcctgaatgtactctaggaggtgaagatggtcaggagttg
atagtacatccacctgaggtgagggagccagttccattgataatacaccatcttcctata
gcagtaacctttggttttattggtgaagagaatattgtggtaattgatccaacttacttt
gaagaggctgttatgggcggtagtatgaccgctacacttaatacaaatggggatgtatgt
gctattcagaaagcgggaggagtgggtgtcttaccgagtgtcatcatgcagtgcttgcgt
ttagcctctgtgaaggcaggcgacataacaaatattataaagaatgctgttaaatctttc
aataccgaaagatcactaaggaagatcaaacgtcataactcatcagttattgatgtgagt
gaaacagctcagaaagtagacgtaaaattttctactaatcatgtgaatagactaaagttg
tcagaggacagcagggttgctcaaggcaatggtatggaagttgatggtcaaatatcacaa
aaagaaggaactagtaagagagatagtagtgctaagagcttcattggtggaccttctagc
tgggacccacattcgaagggcattgatcctgatgcattaagagcttcttttgcttcacga
gtagtcctagcacctactgagaagcttgaagactctaaagtcgacgagcccactgatatt
gaaccgaaccaaccaattgttgatgacaattcatatatatcaccaaaagaagcaaccaat
acaaaatcaaaaacaaatgaagagaagactttgatagatgctataaagcccaagcacagg
aggaggaggaaggcatcttcccaacattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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