KEGG T05350: 108222864

Daucus carota (carrot): 108222864

Entry

108222864         CDS       T05350

Name

(RefSeq) dicer-like protein 4

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

dcr Daucus carota (carrot)

Brite

KEGG Orthology (KO) [BR:dcr00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dcr03036]
    108222864
Chromosome and associated proteins [BR:dcr03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    108222864
   microRNA pathway
    RISC loading complex
     108222864

SSDB

Motif

Pfam:

Ribonuclease_3 Dicer_dimer Ribonucleas_3_3 Helicase_C DEAD dsrm ResIII DND1_DSRM PAZ DUF643

Other DBs

NCBI-GeneID:

108222864

NCBI-ProteinID:

XP_017252302

Position

5:38410284..38432719

AA seq 1659 aa
MASGDSDSNTLSVVSIDEEGHHGSDEKNPTLIARQYQTKLCQKALSENTIAYLGTGCGKT
HIAVLLIHEMRHLIKKPQNNICVFLAPTVALVEQQAKVIKDSIDVKVGIYCGSSKHLKRH
TNWEKELAQHEVLVMTPQVLLWNLSHCFIRIELIALLIFDECHHAQPASNHAYAEIMKVF
YNSNATKLPRVFGMTASPILGKGASVSGLESLLRAKVYSVEDKEELERFVTSPKVSVYYY
TTAADGPSSPLVYYSKLEGIKSQCVSTLVENISDMDSLKTSKKMLQKLHTNLCFCVEKLG
VWGAFQAANILLKGDCVVQNELLEMEGQNERMEMGEQSSHVSICDKYLSQAAIMFSSDCQ
KDHTKKKLNSPEVLQEPFFSKKLLQLIDILSNFRSQQNMKCIIFVNRIVTARSLSSILQS
LKVLSAWKCDYLVGVHSGLKSVSRKSTNALLAKFQSGEINLLVATKVGEEGLDIQTCCLV
VRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNEKEQNLIDSFSKAEDKMNEEIEFRTS
TATVCDTDEKTYRVELTGATISSGSSISLLYRYCSKLPHDEFFKPKPDFSYFDEADGTVC
QIVLPSNAPIHQVSSAPQSSKDAAKRDACLEACKQLHQLGALTNYLLPEQDVENEDLESL
SDSDCSDDEDTRRELHEMLVPDVLKEPWSKAEDYVYLTSYFVKFRPLPPDREYKPFGLYV
KVSLPGEAERMKLDLHLARGRSVVTELIPSSTMLFSRDEIALAEKFQEMFLKVIIDRSEF
NSEYVPLGRIDFDILAPRTYYLMLPVIWNEYEEAMIVDWNLVMRCLSSPIFNMPEVAKAN
GLSQPSELLHLANGPKSVHDVVNSLIYVPSKKLFYFVSDVLSEKNAYSDYKASKSHVHHF
SEKFGVHLLHPRQALLKAKQLFCLENLLRKKGNLESREKEEHFVELPPEICELKIIGFSK
DIGSSLSLLPSVMHRLESLLVAFELKDLLSVSFPEGAEVSASRVLEALTTEKCNEHFSLE
RLEVLGDAFLKFAVGRRLFLLHDALDEGQLTRKRSSVVNNSNLLKLAVANRLQVYIRDQS
FDPCQFFALGRPCSVVCSAETEKSIHSSHCSGAENSDIELRCTKSHHWLHKKTIADVVES
LVGAFIVDSGFKGAAAFLKWMGIKVEFEDSKVSHICSASSIYLPLAAQIDIAALEDSIGY
QFNNKGLLVQAFVHPSYSYHYGGCYQRLEFLGDAVLDYLITSYLYSVYPNLKPGQLTDLR
STCVNNICFANIAISRSFYKYIISESSGLCKSMEKYVLFSRTHQLNENLVEVPPCPKALG
DLVESCIGAILLDTGFNLNNVWKTMLSFLDPVINFSGLQLNPIRELQELSQSYNMELEFA
SAKKDNTYIVDVKVKGKNVCEHSCASNISKKAAKRRAAKQVIRILKELGYKPKSKSLEEV
LKSTHKVEAKLIGYDETPIDVNAQYAIARNEKIPTDVSSPYAAICYNETATNVRSPNAAG
LDNLKVQDSRTSGASSSNVHSLGVEPHRSGGINIQPIMPMSSLCDTRKCQPTVKKYSDSC
YSESQTPGLSMKKSAKSLLFEICAANCWKPPVFVCCKETGASHLKEFTYKVIVKPDLGNC
FIEAIGKPSGKKKEAAENAADGAVWLLKEHFFVDQNLWS

NT seq 4980 nt +upstreamnt +downstreamnt
atggcttccggcgattcagactccaatacgttgtccgttgtgtcgattgatgaagagggt
catcacggttctgatgaaaaaaaccccacactcattgctagacagtatcagacgaagctc
tgccagaaagctttgagtgaaaacacaatagcctatctgggaactggttgtgggaagact
cacattgctgttcttttaattcatgagatgcgacacttgataaaaaaaccccagaataac
atttgtgtctttttagctcctacagttgctctggttgagcagcaagccaaagtcatcaaa
gactcgattgacgttaaagttggcatctactgcgggagttctaagcatctgaagcgtcat
accaattgggagaaagaattagcacagcatgaggttcttgtcatgacccctcaagtactc
ttatggaatttatcacactgcttcatcaggattgaattgatcgcgcttctaatttttgac
gagtgccatcatgcacaacctgcgagcaatcatgcttatgctgaaatcatgaaggtattt
tacaatagtaatgcaacaaagcttcctcgtgtatttggcatgaccgcatctccaatattg
ggaaaaggtgcttctgtcagtggccttgagtctttacttcgtgctaaggtttattctgtt
gaagacaaggaagaacttgaacggtttgtgacatctcctaaagttagtgtatattattac
actacagcggcggatggaccatcttcccctctagtttactatagtaaactagaggggata
aagtcccagtgtgtatcaacactggtagaaaatataagcgacatggatagcctaaaaacc
tccaaaaagatgcttcagaaactgcacactaatttgtgtttctgtgtagagaaacttggt
gtttggggagcattccaggctgctaacatactcttaaagggtgactgcgtggtgcaaaat
gaactactggagatggaaggacaaaatgaacggatggagatgggagaacagagctctcat
gtctctatatgcgacaaatatctttctcaagctgccattatgttttcgtcagattgccaa
aaagatcacaccaaaaagaagttaaattcacctgaagtcctacaggagccctttttctcc
aaaaagctcttgcaacttattgacatactttccaattttaggtcccagcagaacatgaaa
tgtattatttttgtcaatagaattgttactgccaggtccttgtcatctatacttcagagc
cttaaagttctatcagcttggaaatgtgattatttggtaggagtccactctggactaaaa
agcgtgtcgcgaaaatctactaatgctttgcttgctaaatttcaatccggtgagataaat
ttgttggttgcaactaaagttggggaggaaggtcttgatattcaaacatgctgccttgta
gtaaggttcgatctcccggaaactgttgccagttttatacaatctaggggacgtgcacgc
atgcctcagtcagaatatgcattcctggtagacagtggcaatgagaaggagcaaaatctt
atcgacagtttttctaaagctgaggataaaatgaatgaagaaattgaatttagaacatct
actgccacagtttgtgatacagacgagaaaacatacagagtagaattgacgggtgccaca
atcagttctggaagtagcatttcattgctttaccgctattgttcgaaacttccgcatgat
gaattttttaagcccaagccagatttctcatactttgacgaggcagatggaactgtctgc
caaatagttcttccctccaatgctccaattcatcaagtgtcaagtgcacctcaatcttct
aaggatgcagcgaaaagagatgcctgcttggaagcatgtaaacaattacatcagttgggt
gctttaaccaactacctcttacctgaacaagatgttgaaaatgaggaccttgagtcctta
tcagattctgactgctctgatgatgaggatacaagaagagaacttcatgaaatgcttgtt
cctgatgtcctgaaagagccatggagcaaggcagaagattatgtctacctcacctcctac
tttgtgaagtttagaccgcttccaccagatagggagtataaaccatttggtctgtatgtg
aaagtatctcttcctggagaagctgaaagaatgaaactagatcttcatttggcacgtggt
agatctgtagtaacagagctaataccatccagtactatgctatttagtagagatgagata
gctttggctgagaagttccaggaaatgttcctcaaggtcatcattgacagatcagagttc
aactctgaatatgttcccttgggaagaattgattttgatatattggctcctagaacatat
taccttatgcttcctgtaatctggaatgaatatgaggaagcaatgattgtggactggaac
cttgtcatgagatgtttatcgtcgccgatattcaacatgccagaagttgccaaggctaat
ggcctttctcaacctagcgagctattgcatcttgctaatggccctaaaagtgtccatgat
gttgtgaatagcttgatttatgttccaagcaagaaattgttctatttcgtttctgatgtt
ttgtcagagaagaatgcatacagtgactataaagcatcaaaaagtcacgttcaccacttc
tctgaaaagtttggcgttcatcttttacatcccagacaagctcttttaaaagcaaagcag
ctcttttgtttggagaacttgctacgaaagaaaggaaatttggaatcacgagaaaaagag
gagcactttgttgaattacctcctgaaatttgtgaactaaagataattgggttttcgaaa
gatattggaagttcattatctttgttaccatcagtcatgcatcgtctggaaagcttgctt
gttgcttttgagttaaaagatttactttctgtctcatttcccgagggagctgaagtatcc
gcttctcgtgtccttgaagcacttacaactgagaaatgcaatgaacacttctctcttgaa
aggctcgaagttcttggtgatgcattcctcaaatttgcagttggcaggcgtctttttctc
ttgcatgatgccttggatgaaggacagcttactagaaaacgttcaagtgtcgtaaataat
tccaatttattgaagctagcggtagcaaacagattacaggtatacatacgcgaccaatca
tttgacccatgtcaattttttgcattgggtcgaccttgttctgtagtttgtagcgctgaa
actgaaaagagtattcattcatcacattgtagtggggcggaaaattctgatatagaatta
agatgcaccaaatctcatcactggttgcataagaaaaccatagcagatgttgtggaatct
cttgtcggcgcatttatagttgatagtggctttaaaggtgcagctgcatttcttaagtgg
atgggtataaaagtggaatttgaagattcgaaggttagccatatttgttcagcaagttcg
atctatttaccacttgctgctcaaatagatatagctgctcttgaagattctataggatat
caatttaacaataaaggtttgcttgtgcaagcttttgttcatccatcatatagctatcat
tatggaggctgttatcagagactggaatttttaggagatgctgtcctggattatcttatc
acttcctatctctattcagtctatccaaacctgaagcctggccagctgaccgatttgaga
tccacatgtgtaaacaatatttgctttgctaacattgcaataagtcggtcattctataaa
tatattatatctgagtctagtggcctctgcaagtccatggagaaatatgtcttgttttct
aggacacatcagcttaatgaaaatttggttgaagtgcccccatgccctaaagctcttgga
gacttggtggagtcatgcatcggtgccattcttctggacacgggattcaatttaaacaat
gtttggaagaccatgctttcctttcttgatcccgtcatcaacttttctggattacagctt
aatcccattagagaacttcaagaacttagtcaatcctacaacatggaattggaatttgca
tctgccaagaaggataacacttatattgttgatgtaaaagtgaaggggaagaatgtttgt
gaacattcttgtgctagcaacatcagcaaaaaagctgccaaaagaagggctgcgaagcaa
gtaattcggattttgaaggagcttggttacaaacccaagagtaaatcgttagaggaggtt
ttgaagtcgacccacaaggtggaagcaaaattaattggttatgatgaaacaccgatagat
gttaatgctcaatatgcaattgctcgcaatgaaaagataccaacagatgttagctctcca
tatgccgcaatttgttacaatgagacggcaacaaatgtgagatctccaaatgccgcagga
cttgataacttgaaggtgcaggattcacgtacaagtggtgcttcatcatccaatgtgcat
tcacttggtgtagaaccacatagatctggaggcatcaatatccaaccaattatgccaatg
tcatctctttgtgatactcgtaaatgccagcctacagtcaaaaaatatagtgatagctgc
tatagtgagtctcagactccaggcctttcaatgaagaagtcagcaaagtcacttttgttt
gaaatttgtgcggccaactgttggaaaccgcctgtatttgtatgctgcaaggagacaggg
gcaagtcacttgaaagagttcacatataaagtgatcgtgaagcccgatttgggaaattgt
ttcattgaagccatcggaaaaccatctggtaaaaagaaagaagctgcggagaatgcagct
gacggggctgtttggctcttgaaagagcatttttttgtagatcaaaatttatggtcgtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (23)   

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