KEGG   Dendrobium catenatum: 110091910Help
Entry
110091910         CDS       T05027                                 

Definition
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
dct  Dendrobium catenatum
Pathway
dct03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110091910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dct03041]
    110091910
Enzymes [BR:dct01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     110091910
Spliceosome [BR:dct03041]
 Complex C
  Other components
   Step II factors
    110091910
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: OB_NTP_bind HA2 Helicase_C S1 DEAD AAA_22 AAA_19 AAA_30 T2SSE AAA DUF2075 Sigma54_activ_2 Flavi_DEAD AAA_14 PhoH AAA_16
Motif
Other DBs
NCBI-GeneID: 110091910
NCBI-ProteinID: XP_020671872
Position
Unknown
AA seq 1171 aa AA seqDB search
MPAAVAEAEDGLKKLEFLSLVSKVCTELESHLGCGDKILAEFITELGRNAESVEEFDAKL
KENGAEMPDYFVRTLLTIIHAILPPKSKSKPNSDSSSKKKSAPFPGLSRVDDRERVKELE
REIEKEVQVKADEESKHRDRDRDRNRDRHRDRDQDRDRRVHRDRDRDHRYDRVRDRARSN
RREEYSNHRAYSDDDEGDGMRHERTRSSGGRNSDEPELYEVYKGKVLRLMDNGCFVELSD
FRGKEGLVHVSQIANRRVTNAKEEVKRGQDVYVKVISVSGKKLSLSMRDVDQNTGKDLLP
LRKSTEDEALRTNPSSGNNGPIVRKGLSGITIVEDDNNALSRRPLKRMSSPEKWEAKQLI
AAGVLDVRDYPMFDEEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRFSIDMSPVKIFK
NPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELR
GVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQDQRQSLPIYKLKKELIQAVHDNQVLVVI
GETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIR
FEDCTGPETVIKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKR
RPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQI
HLTEPEGDVLLFLTGQEEIDHACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDP
APPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR
AGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGTTTLNMKAMGINDLLSFDFMD
PPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCTDEILT
IIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFV
QSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTL
VENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFYKSSDPT
KMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt
atgccggcggcggtggcggaggccgaggacggcctaaaaaaactcgagtttctttccctc
gtttcgaaggtgtgtaccgaacttgaaagccatctgggctgcggcgataaaattctggcg
gagttcatcaccgaacttggccggaacgccgaatcagtggaggaattcgatgcgaagctc
aaggaaaacggagctgaaatgcccgactatttcgtacgcactctcctcaccatcatacat
gcaatcctaccccccaaatccaaatccaagcccaactctgattcttcttcgaagaaaaaa
tctgccccctttcccggactttcccgtgtggacgaccgcgaacgcgtcaaggagctagag
cgtgagatcgagaaggaagttcaggttaaagcggacgaggaaagtaagcaccgcgacagg
gatcgcgatagaaatcgcgatcgccatcgcgatcgtgatcaggacagagatcggagagtc
catcgcgaccgtgatcgggatcacaggtatgatcgagtcagagatagagctaggagtaat
agaagagaagaatacagcaaccatagagcttatagcgatgatgacgaaggtgatggcatg
agacatgagagaacccgttctagcggtggaaggaattctgatgaaccggagctctatgag
gtttacaaggggaaggtattgcgcctgatggacaacgggtgctttgttgagttatctgat
ttcagagggaaggagggacttgttcatgtttcacagattgccaatagaagagtcaccaat
gcaaaggaagaggtgaagcgtggtcaggatgtatatgttaaggtgatctcagtgtctggg
aaaaagcttagtctatccatgagggatgtggatcaaaacactgggaaggatctcctgcca
ttaaggaagagcacagaggatgaagctttaaggaccaacccctctagtggaaacaatggc
cctattgtaaggaaaggtctttcaggcattactatcgttgaggatgataataatgcattg
tccaggaggccattgaaaaggatgagctcgcctgagaagtgggaagcaaagcagctaatt
gcagctggtgttctggatgtgcgtgattatccaatgtttgatgaagagggggatggactc
ttatatcaggaagaaggcgctgaagaagaacttgagattgaactcaatgaagatgaacct
gcatttttgcaaggccagagtcggttttccattgacatgtctcctgtaaagatcttcaaa
aatccagagggttctttaagcagggcagcggctctccagtctgctctcatcaaggagcgg
agagaagttcgtgagcagcaacagagaactatgcttgattctatcccaaaggatctcaat
cgaccgtgggaagatccaatgccggagacaggggagaggcaccttgcacaggagctgaga
ggtgtaggattgtctgcttatgacatgccggaatggaagaaagacgcatatggaaaagct
ttgacatttggccagagatcaaaactttcaatacaagatcaaagacagagtcttccaatc
tacaaattgaagaaagaactgattcaggctgttcatgataaccaggtattggttgtcatt
ggcgagactggctctgggaagactacacaggtgactcaatacctagctgaggcaggttat
actacaagaggaaagattgggtgcacacagccccgtagggtggcagcaatgtcagttgcc
aaaagggtggcagaggagtttggttgtcggttaggtgaggaagtcggttatgctattcgg
tttgaggactgcactgggccagaaactgtgataaagtatatgacagatggcatgcttctg
agggaaatattggttgatgaaagcctttcacagtattctgttatcatgctcgatgaagct
catgagaggacaatccacacagatgtgctctttggtttactaaaacagctagtgaaacga
aggcctgaacttcggttgattgtcacttcagccacactagatgcagagaagttctctggg
tatttcttcaactgcaatatcttcacaattcctggtagaacatttcctgttgagatactc
tacacaaagcagccagaaagtgattatctagatgcagcactgatcactgttttgcagatt
cacttaacagaacctgaaggagacgttcttcttttcttgactggtcaagaagagattgat
catgcttgtcaatctctttatgagagaatgaaaggtctgggtaagaatgtgccagaactg
attatcttgcctgtgtacagtgctcttcccagtgaaatgcaatctagaatttttgatcct
gctcctcctggtaagagaaaagttgttgtagctactaatattgcggaggcttcattgaca
attgatggaatattttatgtcattgaccctggctttgctaagcaaaatgtgtacaaccct
aaacaagggcttgattccttggtcatcactcctatatctcaagcatcagctaagcaaaga
gccggccgtgcagggcgtactggcccagggaagtgttatcgtctctacacagagagtgcc
tatcgcaatgaaatgtctcctaccacaattccagaaattcagaggattaatcttgggaca
acaacattgaatatgaaggctatggggataaatgatctcttatcttttgattttatggat
cctccatcgcctcaagcccttatatctgccatggaacagttgtacagtctaggagcttta
gatgaagaaggacttttgactaaactagggagaaaaatggcagagttcccattggatcct
ccattgtctaagatgctacttgctagtgtggaccttggatgcactgatgaaatcctgacc
atcattgctatgattcagactgggaatattttctacaggccaagagagaagcaagcccaa
gcagatcaaaagcgagccaagtttttccagccagaaggagaccacttaactttgcttgct
gtttatgaggcttggaaagctaagaatttttctggcccgtggtgttttgagaactttgta
cagtcccgttcccttaggagggctcaagatgttagaaagcaactcctcactattatggat
aggtacaaattggatgttgtcagtgccggtaaaaacttcacaaagataaggaaggccatt
actgcaggattcttctttcatgctgctagaaaagatcctcaagaaggttacagaacccta
gtggagaaccaaccagtctacattcatcccagcagcgctctcttccaaaggcagccagat
tgggtcatatatcatgagcttgtcatgacgacaaaggagtacatgcgtgaagttaccgtc
atcgatcccaaatggcttgtagaactcgcacctaggttttataaatcttcagatccaaca
aagatgagcaagcgaaagcgtcaagagagaatcgagccactctatgatagataccatgaa
ccaaattcatggcgtttgagcaaacgccgtgcttga

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