KEGG   Dickeya parazeae: Dd586_0285
Entry
Dd586_0285        CDS       T01138                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
ddc  Dickeya parazeae
Pathway
ddc02020  Two-component system
ddc02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ddc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Dd586_0285
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Dd586_0285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ddc03021]
    Dd586_0285
Transcription machinery [BR:ddc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Dd586_0285
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38
Other DBs
NCBI-ProteinID: ACZ75182
UniProt: D2C206
Position
complement(328767..330200)
AA seq 477 aa
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQADIHDEIETQE
ISDSEALDTREALEQKEMPDELPLDAAWDEIYTAGTPSGTSTDYRDEELPVYQGETTQTL
QDYLMWQVELTPFSDTDAAIATSIVDAVDNTGYLTVSLDDIRESIGNEEVTLEEVEAVLK
RVQRFDPVGVAARDLRECLLVQLSQFNSDVPRLSEARLIVSDYLDLLANHDFRTLIRTSR
LKEDVLKEALALIQSLDPRPGQSINTGESEYVIPDVLVRKVQGHWMVELNTDSVPRLQIN
QQYAALGNSARNDSDGQFIRSHLQEARWLIKSLESRNDTLLKVTRCIVEQQQAFFEHGEE
FMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTLLSEQGIIVARRTVAKYRESLSIPPSNQRKQLV
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaagcaaggtttgcaactcaggctcagccagcaactggctatgacaccgcagttacag
caggccatccgcctgctgcagttgtccacgcttgaactccagcaggaaatccaacaggcg
ctggaaagcaacccgttgctggagcaggccgatattcatgacgaaatagaaacccaggaa
atcagcgacagcgaagcgttggacacccgcgaggcgctggagcaaaaagagatgcccgac
gagttaccgctcgacgccgcctgggatgaaatctacaccgccggtacgccctccggtacc
agcaccgactaccgtgatgaggaattaccggtctatcagggtgaaaccacgcagacactg
caggattacctgatgtggcaggtggagttgacgccgttttccgataccgatgccgcgatt
gccacgtccatcgtcgatgcggtggacaacaccggttacctgacggtatcgctggatgac
atccgtgaaagcatcggcaatgaagaggtcacgctggaagaagtggaggcggtgctcaaa
cgcgtgcaacgttttgaccctgtcggcgtggcagcccgcgatttacgcgaatgtctgctg
gtacagctatcgcagttcaacagcgacgttccccgtctgagcgaagccaggttgattgtc
agcgactatctcgatttgctcgccaaccatgatttccgcaccctgatccgtaccagccgc
ctcaaagaagacgtattgaaagaagcgttggcgctgattcagtcactggatccgcgccct
gggcagtctatcaatacaggcgaatccgagtatgtcattccagacgtcctggttcgcaag
gtacaaggccactggatggtagaactcaacaccgacagcgtgccacggctgcaaatcaac
caacagtatgccgctcttggcaacagtgcgcgtaacgacagcgacgggcagttcattcgc
agtcatttgcaggaagcgcgctggctcatcaagagtctggaaagccgtaacgataccctg
ttgaaagtcacccgttgcattgtggaacaacaacaggcgttcttcgaacacggtgaagaa
tttatgaaacccatggtgctggcggatatcgctcaggccgtggatatgcatgagtccacc
atttcccgcgtgacgacccagaaatttttgcacagtccgcgtggtatttttgagctgaag
tatttcttttccagccacgtcaatacagacagcggcggcgaggcatcgtccaccgctatc
cgtgcgctggtgaaaaaactcattgcagcggaaaatcccgctaaaccgctgagcgacagc
aagctgaccaccctgctttccgaacagggaatcattgtggcccgccgtactgtcgccaag
tatcgagagtctttatctatcccgccgtcaaaccaacgcaaacagctggtttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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