KEGG   Oleidesulfovibrio alaskensis: Dde_0341
Entry
Dde_0341          CDS       T00294                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
dde  Oleidesulfovibrio alaskensis
Pathway
dde03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dde00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dde_0341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dde03019]
    Dde_0341
   03009 Ribosome biogenesis [BR:dde03009]
    Dde_0341
Enzymes [BR:dde01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Dde_0341
Messenger RNA biogenesis [BR:dde03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Dde_0341
Ribosome biogenesis [BR:dde03009]
 Prokaryotic type
  rRNA helicases
   Dde_0341
SSDB
Motif
Pfam: DEAD Helicase_C ResIII DUF6181 PWP3A-B_C GEP5
Other DBs
NCBI-ProteinID: ABB37142
UniProt: Q316K4
Position
complement(330553..332142)
AA seq 529 aa
MTDETNRNSGFGDELQNDPAARMASELTGVDEPENALPALTFEEVPDTIRQAAARAGWQS
LMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLIDRIDPHKNECQALVLVPTRELAL
QVVHEAEVLYQELGINIAAVYGGVGYGKQTDALKAGAQLVVGTPGRVLDHLLRRTLTLDA
LRVLLFDEADRMLSIGFYPDMKEVQRYLPRRRISTYLFSATYPPHVVRLAGEFLHDPQML
SLSHSQVHITQTPHVFYECKPMEKDRVLVRIIEIENPASAIIFCNTKSNVHYVTAVLQGF
GYNADELSADLSQAKREQVLKKLRNGQVRFLVATDVAARGIDIPDLSHVVLYEPPEDHES
YIHRAGRTGRAGASGEVISLVDIMQKLELGRIAKHYQIDMQMRPTPTDEDVAKVATERMT
AMLEAKLRSRSPLQRERMQRFMPMVRQMAEDEEQMKLVAMLIDELYQDSLHAAPPAPSAE
EHRQRPAARPAPRTAPAPRPQQAAAGNEQQDSDPRPKRRRRRRKPASSE
NT seq 1590 nt   +upstreamnt  +downstreamnt
atgacggatgaaaccaaccggaattccggttttggagacgagctgcagaacgaccccgca
gcacgcatggccagcgaactgaccggcgtggacgagccggagaacgcgctgcccgctctg
acttttgaagaagtacccgacaccatcaggcaggccgccgcacgcgccggctggcagagc
ctgatgcccgtgcagctgcacaccatgccctattttctccagcgccgcgatcttatggtt
cagtcgcgcacgggcagcggcaaaaccggtgcctacctgctgccgttgattgaccgcatc
gacccgcacaaaaacgaatgtcaggctctggtgctggtgcccacccgcgaactggccctg
caggtcgtgcatgaagccgaagtgctgtatcaggagctgggcataaacattgccgccgtg
tacggcggtgtgggctacggcaaacagaccgacgccctcaaggccggagcccagctggtg
gtgggcactcccggtcgtgtgctggaccaccttctgcgccgcacgctcacgctggacgcg
ctgcgtgtgctcctgttcgacgaagcggaccgcatgctttccatcggtttctaccccgat
atgaaagaagtgcagcggtacctgccgcgcagacgcatcagcacctatcttttttccgcc
acatatccgccgcatgttgtccggcttgccggggaatttctgcacgatcctcagatgctc
agcctcagtcattctcaggtgcacatcacgcagaccccgcacgttttttacgaatgcaag
cccatggaaaaagaccgtgtgcttgtacgcatcattgaaatagaaaatcccgcgtcggcc
atcatcttctgcaacaccaagtccaacgtgcactatgtgacggccgtgctgcagggcttc
ggatacaatgccgacgaactgtctgccgatctttcgcaggccaaacgggaacaggtgctc
aaaaaactgcgtaacggacaggtgcgttttctggtagccaccgatgtggcggcccgcggc
atcgacattcccgatctttcacatgtggtgctgtacgaaccgccggaagaccacgaatcg
tacatccaccgcgcaggacgcaccggacgtgccggagccagcggcgaagtgatatcgctg
gtggacatcatgcagaagctggaactgggccgcatagccaagcattaccagatagacatg
cagatgcgccccacccccacggatgaagacgtggcaaaagtggccaccgagcgcatgacc
gccatgctggaagccaagctgcgctcgcgctcgccgctgcagcgcgaaagaatgcagcgt
ttcatgcccatggtacgccagatggccgaagacgaagaacagatgaagcttgtggccatg
cttattgacgagctgtatcaggattcgctgcatgccgctcctcccgcgccttcggcggaa
gaacacaggcagcgccccgcagcgcggcccgcgccgcgcaccgctccggcaccacggccc
caacaggcggcagccggtaatgaacagcaggacagcgatccgcggcccaaaagacgcaga
agacgcaggaagcccgccagctctgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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