KEGG   Pseudodesulfovibrio mercurii: DND132_0330
Entry
DND132_0330       CDS       T01709                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ddn  Pseudodesulfovibrio mercurii
Pathway
ddn03420  Nucleotide excision repair
ddn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ddn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DND132_0330
   03430 Mismatch repair
    DND132_0330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ddn03400]
    DND132_0330
Enzymes [BR:ddn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DND132_0330
DNA repair and recombination proteins [BR:ddn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DND132_0330
   MMR (mismatch excision repair)
    Other MMR factors
     DND132_0330
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 DEAD AAA_12 Hemerythrin AAA_11 AAA_22 ResIII Uso1_p115_C
Other DBs
NCBI-ProteinID: EGB13547
UniProt: F0JER2
Position
complement(365951..368107)
AA seq 718 aa
MSIDFENELNDAQREAVTTTEGPVLVIAGAGSGKTRTIVYRLANLVQKGVDPAQILLLTF
TRKAAQEMLARAETILGRPLHGTSGGTFHSFAYATLRRNAADIGFAGGFTLMDRADSENV
CKEVRDELKLGKGDRSYPKKATLLDMITKSRNKELTIEAVMEREAYHLSPYLEDIQRIAD
GYAGFKRKHALVDYDDLLFLLDDLLAKNEPLRNQLQARYRYIMVDEYQDTNLVQARIVQQ
LAGPRGNVMAVGDDAQSIYAFRGANVANILKFPKIFEGTKLIRLEKNYRSVQPILDLTNE
ILKGATTKFDKHLYSDLKSDHLPQVIHPLSDQTQARLVVDQILELGRKHMLHDVAVLFRA
SYQSFPLEVALTRIGIDYQKFGGIRFHEAAHVKDVLAFIRLVINPHDLMAWQRAMEHIKG
VGAKTVAKIYQAMHSGDEKYMAKMVKKHEQLRELLAELDRLRAGEKRPSAVLEAVLAFYQ
PILIEKYPDDYPKRQAGLEQLSQIAAGYKDMDQFIGDLSLDGDPDDEQRKENAVVLSTVH
SAKGLEWAAVIIIDLVEDRFPSRKAMQRAEDLEEERRLMYVACTRAKEELRLFVPGSVYN
RASGLSDPTLPSPFVMELPDTVFERLNESYGGGLETRRRPAYSLPDPVPPVYESRDEADA
RDVPEPARPKVDPSKLGFCKHKIFGKGKITAQLDANKYRVNFPGFGLKVIIGDYLEFL
NT seq 2157 nt   +upstreamnt  +downstreamnt
atgagtatcgatttcgagaacgaactgaatgacgcccagcgcgaggccgtgaccaccacc
gagggaccggtgctggtcatcgccggggccgggtcgggcaagacccggaccatcgtctac
cgcctggccaacctggtccagaagggcgtggacccggcccagatcctgctcctgaccttc
acccgcaaggccgcccaggagatgctcgcccgtgccgagaccatcctcggccgccccctg
cacggcacctcgggcggcaccttccactcgttcgcctacgccaccctgaggcgcaacgcg
gcggacatcggcttcgcgggcggattcaccctcatggaccgggccgacagcgaaaacgtc
tgcaaggaggtccgggacgaactcaagctcggcaagggcgaccgctcctatcccaagaag
gccaccctgctggatatgatcaccaagtcccgcaacaaggagctgaccatcgaggcggtc
atggagcgcgaggcctaccacctgagcccctacctcgaggacatccagcgcatcgccgac
ggctacgccgggttcaagcgcaagcacgccctggtggactacgacgacctgctcttcctc
ctggacgacctgctggccaagaacgaacccctgcgcaaccagctgcaggcccgctaccgc
tatatcatggtggacgagtatcaggacaccaacctggtccaggcgcgcatcgtccaacag
ctggccggaccacggggcaacgtcatggccgtgggcgacgacgcccagtccatctacgcc
ttccgcggggccaacgtggccaacatcctgaaatttccaaagatatttgagggcaccaag
ctcatccggctggaaaagaactaccgctcggtccagcccatcctcgacctgaccaacgaa
atcctcaagggcgcgaccaccaagttcgacaagcacctctactcggacctcaagagcgac
cacctgccccaggtcatccatcccctgagcgaccagacccaggcccggctggtggtggac
cagatcctcgaactgggccgcaagcacatgctccacgacgtggccgtgctcttccgcgcg
agctaccagtcctttcccctggaagtggccctgacgcgcatcggcatcgactaccagaag
ttcggcggcatccgcttccacgaggccgcccacgtcaaggacgtgctcgccttcatccgc
ctggtcatcaacccgcacgacctgatggcctggcagcgggccatggagcacatcaagggc
gtgggggccaagaccgtggccaagatctaccaggccatgcactcgggcgacgagaaatac
atggccaagatggtcaagaagcacgaacagctcagggagctgctggccgaactggaccgg
ctgcgcgcgggcgagaagcgcccgtcggccgtgctcgaggccgtgctggccttctaccag
cccatcctcatcgagaaatatccggacgattaccccaagcgccaggccgggctggagcag
ctcagccagatcgcggcgggctacaaggacatggaccagttcatcggcgacctctccctg
gacggcgatccggacgatgagcagcgcaaggagaacgcggtggtcctgtccacggtccac
tcggccaaggggctcgaatgggcggcggtgatcatcatcgacctggtggaggaccgcttc
ccgtcgcgcaaggccatgcagcgggccgaggacctggaggaggagcgccgcctcatgtac
gtggcctgcacccgggccaaggaggaactccggctgttcgtgcccggctcggtctacaac
cgggccagcggcctgtccgaccccaccctgcccagccccttcgtcatggagctgccggac
acggtcttcgagcggctgaacgagtcctacggcggcggcctggagacgcggcggcggccc
gcctactccctgcccgatccggttccgcccgtttacgagtcccgcgacgaagcggatgcg
cgggacgtcccggaaccggcgcggcccaaggtggacccgtccaagctcgggttctgcaag
cacaaaattttcggcaagggcaagatcaccgcccaactggacgcgaacaaatacagggtc
aacttccccggcttcggcctcaaggtcatcatcggggactacctggaattcctctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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