KEGG   Pseudodesulfovibrio mercurii: DND132_2739
Entry
DND132_2739       CDS       T01709                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ddn  Pseudodesulfovibrio mercurii
Brite
KEGG Orthology (KO) [BR:ddn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ddn03032]
    DND132_2739
   03400 DNA repair and recombination proteins [BR:ddn03400]
    DND132_2739
Enzymes [BR:ddn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     DND132_2739
DNA replication proteins [BR:ddn03032]
 Prokaryotic type
  DNA Topoisomerases
   DND132_2739
DNA repair and recombination proteins [BR:ddn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      DND132_2739
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim Auto_anti-p27 Toprim_4
Other DBs
NCBI-ProteinID: EGB15942
UniProt: F0JJ43
Position
3044468..3046879
AA seq 803 aa
MPKDLIIVESPAKVKTISKFLGKDYMVDASVGHVRDLPTRDLGVDEENDFAPHYEIIQGK
EDVVKRLKAAAKKADTVYLAPDPDREGEAIAWHVAELLRPVNDNIRRIQFNEITSRAVKE
ALAHAQDLNENLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFKADEYWPFKVLLAGGNPPPFWMDLHKLEGKAVKPGANHISTASEAEALQALLEQG
AFTVDSVQEKQRKRQPLPPYITSTLQQDANRRMGYSAKRTMSIAQRLYEGVELGSRGTTA
LITYMRTDSVRIAKEAQEAAKELILEMFGADYYPSKTRNFKTKGGAQDAHEAIRPVDVAI
TPESVKSFLPAEQYKLYRLIWQRFVGSQMASATFWDTTVLVNAPQTVWRAKGERLLFAGF
LAAMDKAGSEDDVELPKLHEGEVLQLNELKKEQKFTQPPPRYSEASLVKTLEELGIGRPS
TYAAIISTLIDREYARLEEKRFVPTELGFTVSDQLSEHFQALMDVGFTAQMESLLDDVAD
GKKNWGELLRDFGGDFYPTLEKARTEMARSQQVTDINCDQCGKPMAIKFGKTGEFLGCTG
FPTCRNIKNFTRDEEGHIHVVEREKPEDTGVICEKCGRPMAIKQSRRGEFLGCTGYPDCK
SIVNFTRDEEGNIKVVESEKPEVVGVCPDCGGELLLKKARTGSRFIACSNYPDCTYAAPY
STGVPCPREGCTGELVEKSSRRGKIFYSCSEYPKCDYAVWNWPINEHCPKCDHPILVRKT
TRDKGDHIACPKKGCDYTRPVDE
NT seq 2412 nt   +upstreamnt  +downstreamnt
atgccgaaagatttgatcatcgtcgagtcccccgccaaggtgaagaccatctccaagttc
ctgggaaaggactacatggtggacgcctctgtgggccacgtgcgcgacctgcccacccgc
gacctgggcgtggacgaggagaacgacttcgccccgcactatgagatcatccagggcaag
gaggacgtggtcaagcgcctcaaggccgcggccaagaaggcggacaccgtctatctcgcg
cccgacccggaccgcgagggagaggccatcgcctggcacgtggccgagctgctccggccg
gtgaacgacaacatccggcgcatccagttcaacgagatcacctcccgggcggtcaaggag
gccctggcccacgcccaggacctgaacgagaacctgttcgactcccagcaggcccggcgc
atcctggaccggctggtgggctacaagatttcgcccatcctgtggaagaacgtgaagcgc
ggtatctcggccgggcgcgtgcagtccgtggcgctcaagatcctggtggagcgcgaaaag
gagcggcgcgccttcaaggcggacgaatactggccgttcaaggtcctcctggcgggcgga
aacccgccgccgttctggatggacctgcacaagctcgaaggcaaggcggtcaagccgggg
gccaaccacatctccaccgcgagcgaggccgaggccttgcaggccctgctcgaacagggc
gcgttcaccgtggactcggtgcaggaaaagcagcgcaagcgccagcccctgccgccgtac
atcacctctaccctgcaacaggacgccaaccggcgcatgggctattcggccaagcggacc
atgtccatcgcccagcgactctacgagggcgtcgagctcggcagccggggcaccaccgcc
ctgatcacctacatgcgtaccgactccgtgcgcatcgccaaggaggcccaggaagcggcc
aaggagctgatcctggagatgttcggggcggactactatccgtccaagacccggaatttc
aagaccaagggcggggcccaggacgcgcatgaagccatccggccggtcgacgtggccatc
acgcccgaaagcgtgaagagcttcctcccggccgagcagtacaagctctaccggctcatc
tggcagcggttcgtaggctcgcagatggcctcggccaccttctgggacaccaccgtgctg
gtcaacgccccgcagaccgtgtggcgcgccaagggcgagcggctgctcttcgccggtttc
ctggcggccatggacaaggccggttccgaggacgacgtggagctgcccaagctgcatgag
ggagaggtcctgcaactcaacgagctgaaaaaggaacagaagttcacccagccgccgccg
cgctactccgaagcgtcgctggtcaagaccctggaggagctgggcatcggccggccgtcc
acctacgcggccattatctccaccctgatcgaccgcgagtacgcccggctcgaggagaag
cggttcgtgcccaccgagctgggcttcaccgtgtccgaccagctgtccgagcacttccag
gccctcatggatgtgggcttcaccgcccagatggagtccctgctcgacgacgtggccgac
ggcaagaagaactggggggaactgctccgtgacttcggcggcgacttctaccccaccctg
gaaaaggcgcgcaccgagatggcccggtcccagcaggtcacggacatcaactgcgaccag
tgcggcaagcccatggccatcaagttcggcaagaccggcgaattcctgggctgcaccggg
ttcccgacctgccggaacatcaagaacttcacccgcgacgaggaaggccacatccacgtg
gtcgagcgcgaaaagcccgaggacaccggggtcatctgcgaaaagtgcggccgccccatg
gccatcaagcagtcccggcgcggcgagttcctgggctgcaccggctacccggactgcaag
tccatcgtcaacttcacccgcgacgaggaaggcaacatcaaggttgtggagtcggaaaag
cccgaggtggtcggcgtctgcccggactgcggcggcgaactgctgctcaagaaggcgcgc
accggctcgcgcttcatcgcctgctccaactacccggactgcacctacgccgccccgtac
tccacgggcgtgccctgcccgcgcgaagggtgcaccggcgaactggtggagaaatcctcg
cgccggggcaagatattctactcctgctccgaataccccaagtgtgactacgcggtctgg
aactggcccatcaacgagcactgccccaagtgcgaccatcccatcctcgtgcgcaagacc
accagggacaagggcgaccacatcgcctgccctaagaagggctgcgattatactcgtcct
gtggacgagtag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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