KEGG   Dickeya dianthicola: DDI_2539
Entry
DDI_2539          CDS       T05141                                 
Name
(GenBank) RNA polymerase sigma factor for flagella operon
  KO
K02405  RNA polymerase sigma factor FliA
Organism
ddq  Dickeya dianthicola
Pathway
ddq02020  Two-component system
ddq02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ddq00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    DDI_2539
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    DDI_2539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ddq03021]
    DDI_2539
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:ddq02035]
    DDI_2539
Transcription machinery [BR:ddq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     DDI_2539
Bacterial motility proteins [BR:ddq02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    DDI_2539
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 FtsX_ECD UPF0147 TFIIE_alpha UPF0122 TgpA_N GerE
Other DBs
NCBI-ProteinID: ATO33707
Position
complement(2575856..2576578)
AA seq 240 aa
MSELYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYD
SLQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEV
AQTLNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVNLRQ
RVMDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKLMSDV
NT seq 723 nt   +upstreamnt  +downstreamnt
gtgagcgaactgtataccgctgaaggcacaatggataaaaattcattatggaagcgctat
gttcccttggtgcgccatgaagccttacgcttacaggttcgtcttccggcaagcgtcgag
ctcgatgatcttctgcaagcgggggggatcgggctgctcagtgccgtagagcgttatgat
tcgttgcagggcacggcattcaccacctatgccgtgcaacgtattcgtggcgcgatgctg
gatgagctgcgcagccgggactgggcgccacgcagtgtcaggcgtaacgctcgggaagtg
gcgcaggcaatgcagcaggctgaacagtcactcggccgggctcctaccgaacaggaagtg
gcccagaccctgaatatctcgctggaggagtatcgccagattcttctggataccaacaat
agccagttgttttcttacgatgaatggcgagaagagcatggggatagcgctgaggcgtta
ctggaaggaaatgaggaagccaatccgttaaatcaactgatggacgtgaatttacgccag
cgagtgatggacgcgattgataacctaccagagcgagagaaaatggtgttgaccctctat
taccaggaagaactgaacctaaaggagattggggcggttctggaggttggagagtcgcgc
gttagtcagttgcatagccaggcgataaagcgtctgcgtgcgaaattaatgagtgacgtt
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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