KEGG   Dickeya dianthicola: DDI_4360
Entry
DDI_4360          CDS       T05141                                 
Name
(GenBank) Urea carboxylase
  KO
K01941  urea carboxylase [EC:6.3.4.6]
Organism
ddq  Dickeya dianthicola
Pathway
ddq00220  Arginine biosynthesis
ddq00791  Atrazine degradation
ddq01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:ddq00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00220 Arginine biosynthesis
    DDI_4360
  09111 Xenobiotics biodegradation and metabolism
   00791 Atrazine degradation
    DDI_4360
Enzymes [BR:ddq01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.4  Other carbon-nitrogen ligases
    6.3.4.6  urea carboxylase
     DDI_4360
SSDB
Motif
Pfam: CT_A_B CPSase_L_D2 CT_C_D Biotin_carb_N Biotin_carb_C Biotin_lipoyl Dala_Dala_lig_C Biotin_lipoyl_2 HlyD_3 RnfC_N ATP-grasp HlyD_D23 GCV_H
Other DBs
NCBI-ProteinID: ATO35528
Position
complement(4498537..4502130)
AA seq 1197 aa
MFERVLIANRGAIAVRIIRTLKKMGVKAIVVYAEADRHSLHVRQADEAWSLGDGPVRDTY
LNQDKLLHIAAESGAQAIHPGYGFLSENAGFVTRCEQAGLIFLGPTVAQMTAFGLKHQAR
ALAQQNAVPLLPGSGLLTSLDSACEQARRIGYPVMLKSTAGGGGIGMQRCNDQDQLVDAF
TRVKRLAGNNFADDGVFLEKFIARARHIEVQVFGDGQGNVIALGERDCSAQRRNQKVIEE
TPAPNLGDDVRAELQATAIRLCQAVNYRSAGTVEYVYDDSSKQFWFLEVNTRLQVEHGVT
EMVYGVDIVQWMVTLGAGCLPPLHTLAATPRGHAIQVRLYAEDPAKQFQPCAGLLSNVSF
PDSLPGLTLRIDHWLDSGCEVSPFYDPMLAKVLVHGDDRGAALDGMAQALNATSLYGIET
NLDWLRHLLTLPAVRRGEIITATLGSVVWQPATLDVLGGGTLTTVQDAPGRTGYWHVGVP
PSGPFDARSFRLGNQLLGNAPDAAGLEITLRGPTLRFNHDCAFIITGAVIDARLDDAPLT
GWRAHHARAGQTLTLGDIQAAGCRSYLLLAGGLACPMYLGSRSTFTLGKFGGHAGRALRA
GDVLHLAAPALPVADAAVPAPDWITHWSLRVIYGPHGAPDYFTPQDIDIFFAADWQVHYN
SSRTGIRLIGPKPQWARTDGGEAGMHPSNIHDNAYAFGTVDFTGDMPVILGPDGPSLGGF
VCPATVIHADLWKLGQLKAGDSIRFVPITLEQADELAREAEHAISAARPVEEQTLAACCP
PPVLYRRPAQDCRPSVTCLAAGDRFLLLEYGEHRLDIALRFRVHALMQWLEQHPLPGVQE
LTPGIRSLQIHFDSLQCPRSVLLAHLQHADDALGNLQDAAVPSRTVWLPLSWDDAACREA
ITRYTQSVRPGAPWCPSNIEFIRRINGLASVDQVKDIVFSARYLVMGLGDVYLGAPVATP
LDPRHRLVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFIGRTLQMWNRDRQTDA
FRQPWLLRFFDQIRFYPVTAQELLAARERFPWGDYPLRSEEGEFRLADYQRSLVEQQPAI
GAFQQQRQQAFDEELARWRADGQFTFDSSLQETVTDDEVIPPHGYGVESQVAGSVWQWLV
APGDTVSAGQVVGILESMKMEIPITAPVAGIIHTLHRQPGHQVQAGQLLMVIEPSGA
NT seq 3594 nt   +upstreamnt  +downstreamnt
atgtttgagcgagtactgattgccaaccgtggcgctattgcggtgcgtatcatccgcacc
ctgaaaaaaatgggcgtgaaagccatcgtcgtttacgccgaagcggatcgtcattcgctg
cacgtgcgtcaggcggacgaagcctggtcgctgggcgacggcccggtgcgcgacacctac
ctgaatcaagacaaattactgcacattgcagcggaaagcggcgcgcaggccattcacccc
ggctacggttttctaagcgaaaacgccggctttgtcacccgctgcgagcaggcgggtctg
atctttctcggcccgaccgtggcgcagatgaccgcgttcggcctcaagcatcaggcgcgt
gcgctggcgcagcagaatgcggtgccgctgctgcccggcagcggcctgctcacctcgctg
gacagcgcctgcgaacaggcgcggcgcattggttatccggtgatgttaaagagcaccgcg
ggcggcggcggcatcggcatgcagcgctgcaatgaccaggaccagttggtcgatgccttt
acccgcgtgaaacgactggcgggcaacaatttcgccgacgacggcgtatttctggaaaaa
ttcatcgcccgcgcccgccacatcgaagtgcaggtattcggcgacggccagggcaacgtc
attgcccttggcgagcgcgactgctccgcccagcgccgcaaccagaaagtgattgaggaa
accccggcccccaaccttggcgacgacgtacgcgccgaactacaggctaccgccatccgg
ctgtgtcaggcggtgaactaccgtagcgcaggcacggtagagtatgtgtacgacgacagc
agcaagcagttctggtttctggaggtcaacacccgcctgcaggtggaacacggcgtgacc
gagatggtgtacggcgtcgacatcgtgcaatggatggtgacgctgggcgccggttgcctg
ccgccgctccacacacttgccgccacgccgcgcggccacgccattcaggtgcggctgtac
gccgaagacccggccaaacagttccagccgtgcgccgggttgctgagcaacgtcagtttc
ccggactcgctgcccggcctcaccctgcgtatcgaccactggctggacagcggctgcgag
gtgtcgccgttttatgacccgatgctggcgaaagtcctcgttcacggcgacgaccgcggc
gcggcgctcgacggtatggcgcaggcgctgaacgccacgtcgctgtacggcatcgaaacc
aatctcgactggctgcgccacctgctgactctgcccgccgtcaggcgcggcgaaatcatc
accgcgacgctgggcagcgtcgtttggcagcccgcgacgctggatgtcctcggcggcggc
acgctcaccaccgtgcaggatgcgcccggccgcaccggttactggcatgtcggcgtcccg
ccttctgggccgttcgatgcgcgatccttccggctcggcaaccagttgctgggcaatgcg
ccggacgccgccgggctggagatcaccctgcgcggcccgacgctgcgcttcaaccacgac
tgcgcgttcatcattaccggcgccgtcatcgacgcccggctggatgatgcgccgctcacc
ggctggcgggctcatcacgcccgcgccgggcaaacgctgacgcttggcgatattcaggcc
gccggctgccgcagctacctgttgctggccggcggtctggcctgcccgatgtatctgggc
agccgcagcaccttcacgctcggcaaattcggcggtcatgccgggcgggcgttgcgcgcc
ggcgacgtgctgcatctggccgcccccgcgctgccggtcgctgacgccgccgtacctgcg
cccgactggatcactcactggtcgttacgggtaatttacgggccgcacggcgcaccagac
tattttaccccgcaagacatcgacatctttttcgccgccgactggcaggtacattacaac
tccagccgcaccggcatccggctgattggccctaaacctcagtgggcgcggaccgacggc
ggcgaagccggcatgcacccgtccaatatccacgacaacgcctacgccttcggcacggtg
gactttaccggcgatatgccggtgattttggggccggacggcccgtcgctgggcgggttc
gtctgcccggcgacggtgatccacgccgatttatggaaactcggccagttaaaagcaggc
gacagcattcgctttgtgccgattaccctggaacaggctgacgaactggcgcgcgaagcg
gaacacgccatctccgccgcgcgcccggtcgaggagcagaccctcgccgcctgttgcccg
ccgcccgtgctgtatcgccgaccggcgcaagactgtcggccatcggtgacctgtctggcg
gcaggcgaccgctttctgctgctggagtatggcgagcaccggctggatatcgccctgcgt
tttcgcgtacacgcgctgatgcagtggctggaacagcatccgttgccgggcgtgcaggag
ctgacgccgggtatccgctcgctgcaaatccacttcgatagcctgcaatgcccgcgcagc
gtgctgctggcgcatctgcagcacgcggacgacgcgctcggcaacctgcaggatgccgcc
gttccctcccgcaccgtgtggctgccgctcagttgggacgacgccgcctgccgcgaggcc
atcacccgctatacccagtcagtcaggcccggcgccccctggtgccccagcaacattgaa
ttcatccgccgcatcaacgggctggcgtcggtggatcaggtcaaagacatcgtgttcagc
gcccgctatctggtgatggggctgggagacgtctacctcggtgcgccggtcgccaccccg
ctcgacccgcgccaccggctggtcaccaccaaatacaacccggcccgcacctggacggcg
gaaaattcggtcggcatcggcggcgcctatctgtgtgtatacggtatggaaggccccggc
ggctatcagttcatcggccgcacattacagatgtggaaccgcgatcgacaaaccgacgct
ttccgtcagccctggttgctgcggttcttcgatcagattcgcttttatccggttaccgcg
caggagctgctggctgcccgcgagcgctttccgtggggagattatccgctgcgtagcgaa
gaaggggagttccgtctcgccgactatcagcggagtctggtggaacagcaaccggcgatc
ggcgctttccagcagcaacgccagcaggcattcgacgaggaactggcgcgctggcgcgcc
gacggccagttcacctttgacagcagcttgcaggaaaccgttaccgacgatgaggtgatt
ccgccccacggttacggcgtggaaagccaggtggcaggcagcgtatggcaatggctggtt
gcccccggcgataccgtcagtgccgggcaagtggtggggattctggaatcgatgaaaatg
gaaatccccatcaccgcgccggtcgcgggcattatccacacgctgcatcgccaacccggt
catcaggtgcaggctgggcagttactgatggtgatcgaaccgtctggcgcctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (30)   

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