KEGG   Dehalobacter sp. CF: DCF50_p1906
Entry
DCF50_p1906       CDS       T02279                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
dec  Dehalobacter sp. CF
Pathway
dec03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dec00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DCF50_p1906 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dec03021]
    DCF50_p1906 (rpoB)
   03400 DNA repair and recombination proteins [BR:dec03400]
    DCF50_p1906 (rpoB)
Enzymes [BR:dec01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DCF50_p1906 (rpoB)
Transcription machinery [BR:dec03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DCF50_p1906 (rpoB)
DNA repair and recombination proteins [BR:dec03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DCF50_p1906 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AFV05908
UniProt: K4LH09
Position
complement(1936435..1939875)
AA seq 1146 aa
MVNPIKVGTRERASYARLREVLDMPNLIEIQQNSYEWFLKEGLREMFRDISPIQDFTGNL
VLEFIDYSLGDPKYEVEECKERDVTFAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTDK
GTFIINGAERVIVSQLVRSPGVYYSETIDTSGKKLYGATIIPNRGAWLEFETDINDNIFV
RVDRTRKLPATVLVRALGYSTNGRILEAFDDNENVKITLERDNTESTEEALVEIYKRLRP
GEPPTVESARSLLESLFFDPRRYDLAKVGRYKLNNKLGLDIPKNIRHLTSEDIIASISRM
LKIINGEGHIDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDIEGITPQVL
INIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHH
SHYGRMCPIETPEGPNIGLIGSLSTYGRINEYGFIEAPYRKVENGKVTDEIHYLTADEEE
KYIIAQANAAVGENGEFLSEKIEARHGEDFVLVPPVNIQYMDVSPKQMVSIATALIPFLE
HDDANRALMGSNMQRQAVPLLRTDAPYIGTGMEYKAAVDSGVCLVSPKEGTALRVTSDEI
IIQNNDGTTTRNRLLKYTRSNQGTCINQKPIVVKGQRIDAGQVIADGPSTDNGELALGRN
VLVAFMPWEGYNYEDAILISEKLVKEDYFTSIHIEEYEADARDTKLGPEEITRDIPNVGE
DVLKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLR
VPHGEAGKVVDVKVFKRENGDELAPGVNQLVRVYIAQKRKISVGDKMAGRHGNKGVISRI
MRQEDMPFMPDGTPIEIVLNPLGVPSRMNIGQVLETHLGWAAKALGMYIATPVFDGARED
DVFDTLRKAGLPGHGKSVLYDGRTGEPFDNEVTVGYMYMLKLHHLVDDKIHARSTGPYSL
VTQQPLGGKAQFGGQRFGEMEVWALEAYGASFTLQEILTVKSDDVVGRVKTYEAIVKGEN
IPEPGVPESFKVLIKELQSLGLDVSVLSEEDQEIEIKDLDDDVTEVAHELGMDDQYSVID
ANDESGIGYDNEDETLDEDLDGDLNDKTEDFPVLSVPESDLGNDLVNDLDNDFSDNMDDD
FDPDYK
NT seq 3441 nt   +upstreamnt  +downstreamnt
atggtgaatcctatcaaagttggaacaagagaacgggcaagttatgcgaggcttcgggaa
gttctggatatgcccaacttaatcgaaattcaacagaattcctacgagtggtttctgaag
gaagggcttcgcgaaatgtttcgcgacatttccccgattcaggattttaccggaaatctg
gttttggaattcatagactacagcctcggcgatccaaaatatgaggtcgaggaatgcaaa
gaacgtgacgttacgtttgcagcgcctctcagagtcaaagtacgccttattaataaggaa
acaggagaggttaaggagcaggaagtgttcatgggggactttcccctgatgaccgataaa
ggcaccttcattattaatggtgcggaacgtgttattgtcagtcagttggtaagatcgccc
ggcgtttattattctgaaacaatcgacaccagcggtaaaaagctttacggcgcaacaatt
attccgaaccgtggtgcctggctggaatttgagacagatattaatgataatatttttgtc
cgggttgacagaacccgtaaactaccggctactgtactggtcagagcccttggctattca
accaatggccggatcctcgaagcgttcgatgacaatgagaacgttaaaattacgctggaa
agagacaatacggaatcaacggaagaagcgctggttgagatttataaacgtcttcgtcct
ggagaaccgcctacggtggagagtgcccgcagtcttctggaatccttgttctttgatccc
agaagatatgatctggcaaaagtaggccgttataagctgaacaacaaactgggtctggat
attcccaagaacatacggcatttaacatccgaggacatcatcgcatcgatttctcggatg
cttaaaataattaatggtgaaggacatattgatgatattgatcaccttggcaacagacgt
ttgcgttcggttggcgagcttcttcagaatcagttcagaatcggtctctcccgtatggag
agagtggtgagagagagaatgacgattcaggacattgaggggattacacctcaggtgctg
atcaatatacgtccagtcgtggccgcaattaaagagttttttggaagcagccagttatca
cagtttatggaccagaccaatccgctggccgagcttacgcataaacgccgtctcagcgcg
ctgggacctggtggtttaagcagagagagagccggatttgaagtgcgtgacgtgcatcat
tcccactatggccggatgtgcccgattgaaacgcctgagggtccgaacattggtttgatt
ggttcactcagcacatatggacgcattaatgagtatggctttattgaggcaccttaccgc
aaagtagaaaatggcaaagtgacggatgagatccattacttaacagctgatgaagaggaa
aaatatattattgcccaggccaatgccgctgttggtgaaaatggggagtttttaagcgaa
aagatcgaagcgcgccacggtgaagatttcgtcctggttccgccggtaaacattcagtat
atggacgtttcgccgaagcagatggtatcgattgcgaccgccttgattccattcctcgag
catgacgatgctaaccgtgctctgatgggttccaacatgcagcgtcaggctgtgcctcta
ctcagaacagatgcaccgtatattggcaccggcatggagtataaggctgctgttgattcc
ggtgtttgtctggtttctccaaaagaaggaactgctttacgggttacttccgatgagatc
atcattcaaaacaatgacggtacaacaacccggaatagacttttgaaatacacgcgcagc
aaccagggaacctgtatcaatcagaaaccgattgttgtcaaaggccagagaatcgatgct
ggtcaggtaattgccgacggcccgtcaacagataacggagaacttgccctcgggcgaaac
gttctggtagcgtttatgccctgggaaggatacaactatgaggatgctattctgatcagc
gagaagctggtgaaagaagattattttacgtccattcatattgaggaatacgaagcagat
gcccgggataccaaacttgggcctgaagagattaccagagatattccaaacgtcggagaa
gatgttttgaaagatcttgacgaacgtggtattatccggatcggtgccgaagtgcgccct
ggagatatcttagtgggcaaggttactccgaaaggggaaacagagcttacggctgaagaa
cgcctgctaagagcaatctttggtgagaaagccagagaagtcagggatacttctttacgt
gttccgcatggcgaggccggaaaagttgttgatgttaaagtatttaagcgcgagaacggc
gatgaactggcccctggggtcaaccaactcgtaagagtctatattgcccagaaacgtaag
atatccgtcggcgataaaatggctggaagacacggaaacaaaggggttatttccagaatt
atgcgccaggaggatatgcctttcatgccggacggcacgccgattgaaatcgttctgaat
ccgctcggtgttccatctcgtatgaatatcggacaggttctggagacccatcttggttgg
gcggcgaaagcactgggcatgtatattgccacaccggtttttgacggagccagagaagat
gatgtctttgataccttgagaaaggccggacttcccggacatggaaaatccgttctttat
gacggccgtaccggtgagccttttgataatgaagttactgttggctacatgtatatgctg
aaacttcaccatcttgttgatgacaagatccatgcccgttctacaggtccgtactcgctg
gtcacccagcagccgctcggcggtaaagcgcagttcggcggtcaacgcttcggagagatg
gaagtttgggcacttgaagcttatggtgcatcgtttacgctgcaggagatacttaccgtt
aaatccgatgatgtggtaggtagggtcaagacctatgaagcaattgtcaaaggtgagaat
attcctgagccgggcgtgccagaatcgtttaaggtactcatcaaggaattgcagagcctt
ggacttgatgtttccgtactttcggaagaagatcaggaaattgaaattaaggatctggat
gatgatgtcacagaagttgcccatgaactgggaatggatgatcagtattccgtgattgat
gccaatgacgaaagcggcattggctatgataatgaagatgagactcttgatgaagatttg
gatggcgatttgaatgacaaaactgaagatttccctgtcctgagtgttcccgagtctgac
cttggtaatgatcttgttaatgatctggacaatgatttcagcgacaacatggatgacgat
tttgatccagattacaagtaa

DBGET integrated database retrieval system