KEGG   Dehalobacter sp. CF: DCF50_p390
Entry
DCF50_p390        CDS       T02279                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
dec  Dehalobacter sp. CF
Brite
KEGG Orthology (KO) [BR:dec00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dec03016]
    DCF50_p390
Enzymes [BR:dec01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     DCF50_p390
Transfer RNA biogenesis [BR:dec03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    DCF50_p390
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS HVSL APOBEC3
Other DBs
NCBI-ProteinID: AFV04396
UniProt: K4L1E6
Position
408765..409304
AA seq 179 aa
MRLFISLNFSEQSLEQFEKWQDELKVKGLRGYWRRRDNLHLTLRFLEEVEEKDLDALKQT
LAGVSGHIGEFAIAFDSLGVFPNIIQPRILWAGIRKEPKLIQLQKQIQQATSQFGAPPDT
RPFKPHLTLASGGIKGIDQNILNWGNTLDLKEIAVHYALMQSKVENGIRQYLTVARYRI
NT seq 540 nt   +upstreamnt  +downstreamnt
atgcgattatttatcagcctgaattttagtgaacagagtcttgaacaattcgaaaaatgg
caggatgaacttaaggttaaaggtcttcgcggctattggcgcagacgtgataacttgcac
ctgacgctgcgttttttagaagaagtggaagaaaaggatcttgatgctttgaaacagacc
ctggcgggtgtttcgggacatatcggtgaatttgcgattgcttttgattcccttggtgta
ttcccgaatatcatacagccccggatactatgggccgggataagaaaagaaccgaagctg
attcagctgcaaaagcagatccagcaggcgacgagccaatttggagcaccgcctgatacc
agaccttttaaacctcatcttaccttagcgagcggcggcatcaagggtatcgaccaaaat
atcctaaattggggcaatacgcttgatcttaaagagattgccgtccattatgctttaatg
caaagcaaagtggagaatggcattcggcaatacctgacagttgcccggtaccggatctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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