KEGG T02278: DHBDCA

Dehalobacter sp. DCA: DHBDCA_p2096

Entry

DHBDCA_p2096      CDS       T02278

Symbol

topA

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

ded Dehalobacter sp. DCA

Brite

KEGG Orthology (KO) [BR:ded00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ded03032]
    DHBDCA_p2096 (topA)
   03400 DNA repair and recombination proteins [BR:ded03400]
    DHBDCA_p2096 (topA)
Enzymes [BR:ded01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     DHBDCA_p2096 (topA)
DNA replication proteins [BR:ded03032]
Prokaryotic type
  DNA Topoisomerases
   DHBDCA_p2096 (topA)
DNA repair and recombination proteins [BR:ded03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      DHBDCA_p2096 (topA)

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim Zn_ribbon_recom zf-GRF HVO_2753_ZBP Toprim_4 Zn_Tnp_IS1595 Lipoprotein_9

Other DBs

NCBI-ProteinID:

AFV03123

Position

complement(2134495..2136588)

AA seq 697 aa
MSKTLVIVESPAKAKSISKFLSKNYLVKASMGHLRDLPKSQIGVDIDHNFEPKYIAIRGR
GDLVKELKAAAKTADRVLLASDPDREGEAIAWHLTHLLGLNPEELSRVEFHEITKPTIQN
AVKNPRKLDIHLVDAQQARRVLDRLVGYKLSPLLWRKVKKGLSAGRVQSVAVRMICDREE
EIRNFEPEEYWTLDADFLCRGGSFAAKLLHKQGKKMTISSREQMDEVLQELRAAAFTVGE
VKTKEKRKQPAPPFTTSSLQQEAYRKLNFTPKKTMMLAQQLYEGLDLGKAGTVGLISYMR
TDSVRIADTAQEEAKGFIIETYGETYYPEEPRKFASKGRTQEAHEAIRPTSALRTPESVK
GFLGREQFKLYRLIWDRFVASQMSAAVYDTITVDVLAGDYLLRANASAVKFPGYLTVYEE
STDEPEKLDNEENCLKGDLAIGQKLQLRQLQEKQHFTEPPARYTEATLVRKMEEEGIGRP
STYAPTIETIQTRGYVAKEDKKLVPTELGEIVINLLKEHFPDIVDQEFTANMEEKLDDIE
DGKSDWKKIVGEFYGPFAVTLDKAEQKIGKIKVEDEVSDEVCELCGRNMVIKMGRFGKFL
ACPGFPDCRNARPLLEEIGVNCPKCGEKLVVRRSKKGRKFYGCSKYPDCDFISWEKPAPH
PCPECGGVMTEKSTRKNKKYVCTNHDCRFTEEIKETE

NT seq 2094 nt +upstreamnt +downstreamnt
atgtcgaaaactttggttatcgttgaatccccggctaaggcaaaatctatcagcaaattt
ttgtccaaaaattatctggtcaaagcttccatgggacatctgcgggatttgccaaagagc
cagatcggggttgatatcgatcataattttgagccgaaatacattgcaatcagaggacgc
ggcgatttggtcaaagagcttaaagctgcagctaaaactgccgaccgtgtcttgctggcg
tccgaccccgacagggaaggtgaagcgattgcctggcacttgacgcacttgctcggtctg
aatcccgaagagctgagcagggtcgaatttcatgaaataacaaaaccaacgattcaaaat
gccgtaaagaatccccgtaaactggatatacatctcgtagatgcccagcaggcgcgcagg
gtcttggacagactggtgggctacaaattaagcccgcttctgtggcggaaagttaaaaaa
ggtttaagtgccggacgtgttcaatctgttgcggtcagaatgatctgtgacagagaagaa
gaaatccgcaactttgaaccggaagagtactggactctggatgcggattttttgtgccgg
ggcggcagttttgccgccaaactgcttcataagcagggcaaaaagatgacaatttcgagc
cgcgagcagatggatgaagtcttgcaggaactccgggcggccgcattcacggtcggagag
gtgaaaacgaaggaaaaacgaaaacagccggcacctccttttacgaccagcagtcttcag
caggaagcctaccgcaaattaaactttacacctaaaaagacgatgatgctggcccagcag
ctctatgaaggacttgatctcgggaaggccggtacggtcggattaatttcgtatatgcgt
acggactctgtccggatcgctgacactgcacaggaagaggccaaaggttttatcatcgag
acttacggcgaaacctattatcccgaggagccgaggaaatttgccagcaaaggccggacc
caggaagcgcacgaggcaatcagaccgacatccgctctcaggacgcctgaatccgtcaaa
gggtttctcggacgagagcagttcaagctttaccggctgatctgggaccgttttgtcgcc
agtcagatgagtgcggcagtttatgatacgattaccgtagacgttctggccggtgattac
cttttaagagccaatgcttcagccgtgaagtttccgggatatctcactgtctatgaagaa
agcaccgatgaaccggaaaaactggataatgaggaaaactgcctgaaaggagatctcgcc
atcgggcagaaactgcagttaaggcagcttcaggagaagcagcatttcaccgaacccccg
gcgcgttatactgaggcaaccttggttcggaaaatggaggaagaggggatcgggcgtccg
agtacgtatgcgccgacgattgaaacgattcaaacgaggggctatgtagcaaaggaagac
aagaaacttgttccaaccgaacttggtgaaattgtgatcaacttgctgaaagagcatttt
ccggatattgttgaccaggagtttacagccaacatggaggaaaagcttgacgatatcgaa
gacggaaaatcggattggaagaaaattgtcggagaattttacggcccgtttgccgttaca
cttgataaagctgagcagaagatcggcaaaatcaaagttgaggatgaagtttcagatgaa
gtctgtgaactttgcggcaggaatatggtcatcaagatgggacggttcggaaagtttttg
gcttgcccgggttttcctgactgccggaatgcgcggcctttactcgaggaaatcggcgta
aactgcccgaaatgcggagaaaaacttgtcgtcaggagatcgaaaaaaggacgtaagttt
tacggctgcagcaaatacccggactgtgattttatttcctgggagaaaccggcacctcac
ccttgtccggagtgcggcggggtaatgaccgagaaaagtaccagaaaaaacaaaaaatat
gtctgcaccaatcatgactgcaggtttaccgaagaaatcaaggaaacagaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (32)   

Download RDF

DBGET integrated database retrieval system