KEGG   Dehalococcoides mccartyi CBDB1: cbdbA1348
Entry
cbdbA1348         CDS       T00273                                 
Symbol
polA
Name
(GenBank) DNA-directed DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
deh  Dehalococcoides mccartyi CBDB1
Pathway
deh03030  DNA replication
deh03410  Base excision repair
deh03420  Nucleotide excision repair
deh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:deh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    cbdbA1348 (polA)
   03410 Base excision repair
    cbdbA1348 (polA)
   03420 Nucleotide excision repair
    cbdbA1348 (polA)
   03440 Homologous recombination
    cbdbA1348 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:deh03032]
    cbdbA1348 (polA)
   03400 DNA repair and recombination proteins [BR:deh03400]
    cbdbA1348 (polA)
Enzymes [BR:deh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     cbdbA1348 (polA)
DNA replication proteins [BR:deh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     cbdbA1348 (polA)
DNA repair and recombination proteins [BR:deh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     cbdbA1348 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     cbdbA1348 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 HHH_5 HHH RecR_HhH DNA_pol_lambd_f IMS_HHH
Other DBs
NCBI-ProteinID: CAI83397
UniProt: A0A916NVS2
Position
complement(1067442..1070153)
AA seq 903 aa
MSKPVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDCYAISF
DKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLA
TRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAAVRAKYGLGPEHV
ADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKLADNAEV
ARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLINRLPGGENPGGGMT
DMFNTPQKVETRYIVANGQNLDSIVKRFTETKELALAVSGTSEEAIDARLTALAISPAEG
EAYFISAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYLMNLLASAGQEIQGL
DFDTMLSAHLLGEKNLGIKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVAD
YTFRLKGLFAAQLAETKLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIF
KLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVD
LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEM
GREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNIL
PSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRVAIYFAEI
KHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDE
KLKEEKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGAVTFEIPLKVELKSGANWG
DME
NT seq 2712 nt   +upstreamnt  +downstreamnt
atgagtaaacctgtaattgtcctttttgacggcacaaatctggttcatcgggcatatcat
gtactgccacctcttacagtccgcaaaacaggtgaagtggtgggggcggcctttggtttt
gcctctatacttataaaagtcttaaccgacctgaaaccggattgttacgctatatccttt
gataaaaaaggccctaccttcaggcatgagatgttcaaggactacaaagcccaacgtccg
cccatgcctgacgagcttgtcagccagctgggacgggtacgccagattgtggatgctttc
aatatgcctgtatacgaacagagcggttttgaggcagatgatgtgctgggcacactggct
accagagccgccgccgaaggcatggaggttataatagcctccggagacgcagactccatg
cagttggtcagtccggatattcgtattctgtatcccggcccggccggttctttttccaat
accagtctgtatgacgaggcggcagtaagggcaaagtacggtttagggccggagcatgtc
gcagattacaaagcccttatgggtgatccgtctgacaacatacccggagtacccggcata
ggcccgaaaactgcccagaaacttatagaagaatacggcggcatagaagatatatataaa
aatctggataaaataagcccgcccggtctccaaaagaaactggcagacaacgccgaagta
gcccgccagagtaaaatattaactacgattgtgtgtgatctgccgctggatttcagtatt
caggaatgtagatcggaacactataaccgccaaaaggtggtagacctttttcgtgaactg
gagtttttcaggctgattaaccgcctgccaggcggtgaaaatcctggcggcggtatgaca
gatatgtttaacaccccccaaaaggttgaaacccgctatattgtagccaacgggcagaat
ctagacagcatcgtgaagcggttcacggaaaccaaagagctggcactggcagtttcgggc
acttccgaagaagctatagatgcccgcctgactgcgctggcaatttcaccggcagagggc
gaagcctattttatttctgcagaatttatcggtagtgcttcggatgggcagatgtttgtt
tccgaaggtcacccgggtttgattgccctgcttacgaataaaaatataaccaagaccgct
cataatgccaagtacctcatgaatctgctggcttcagccgggcaggaaatacagggactg
gactttgataccatgctttctgcccacctgctgggtgaaaaaaatctgggtataaaagac
ttggtatttgaacacttcggggtggaaattgctgatgttgaaaacatacttactcagaac
ggcaagaaaaagagcttcagtgcatcagagctttcagaagccgcccagttggtggctgat
tacaccttccgcctcaagggtctgtttgccgcccagcttgccgaaaccaagctgatagat
ttgtttgtcaatgttgaaatgcctttggtacctatattactgggtatggagcgtagcggt
attatgctggataccgatttgctcaaaggtatggccgaaaaggtgggcgggcagatattt
aaactggaagaagccatatatgcccaagcgggacacagcttcaacataggttctccccag
cagctggggcggatactttttgacgaactgaaactgccggttatcaaaaaaaccaagacc
ggttattccaccggggcagaggtactggatgaactgaagggtgaacaccggattgtagac
ctgatacttgaatatcgtatgctggtcaaactgaaatctacctatctggatactctgccg
cgtatggtgaatccgcatacccgtcgcctgcataccagtttcaaccagaccagaacggct
accggcagattgtcttccagtgaaccgaatctgcaaaatatacccgtcaggggtgaaatg
ggcagagaaatacggcgggcatttattgccccgaagggtaccgtaatgctggctggagat
tactcccagatagacctgcgggtgctggcccatctttccggagaccctgccctgatagag
gcttttcttaaggaccaggatatccacactgctaccgctgccagattgctgaatatactc
ccgtctgaagtgacaaaggaacaacgccgtctggctaaaacggtgaatttcggagtgata
tatggcatgagcagctacgggttggaacaggctaccgagctttcactggcagaggccgac
aaatttatcaaggcatattttgaaaaatacccgcgggtagctatttactttgcggagatt
aagcatcaggctcggactaacgggtacgttgagaccctgctgggaagacgccggtatata
cctgaaatcaattcgcccaaccggattttgcgtgaatcggccgaacgtatggccataaat
atgcctgttcagggtacgtctgcggatattatcaagctggctatggtcaggctggatgaa
aaactgaaagaagaaaagctggaaagccgcctgctacttcaggtgcatgacgagcttata
tttgaagtgcctgacgcagagcttaagcgtatgagtgctttgcttatggaaactatgtca
ggtgcagtcacctttgaaataccgcttaaggttgagcttaagtccggagcaaactgggga
gatatggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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