KEGG T00273: cbdbA4

Dehalococcoides mccartyi CBDB1: cbdbA4

Entry

cbdbA4            CDS       T00273

Symbol

gyrB

Name

(GenBank) DNA gyrase, subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

deh Dehalococcoides mccartyi CBDB1

Brite

KEGG Orthology (KO) [BR:deh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:deh03032]
    cbdbA4 (gyrB)
   03400 DNA repair and recombination proteins [BR:deh03400]
    cbdbA4 (gyrB)
Enzymes [BR:deh01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     cbdbA4 (gyrB)
DNA replication proteins [BR:deh03032]
Prokaryotic type
  DNA Topoisomerases
   cbdbA4 (gyrB)
DNA repair and recombination proteins [BR:deh03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      cbdbA4 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3

Other DBs

NCBI-ProteinID:

CAI82283

UniProt:

A0A916KK81

Position

complement(3884..5812)

AA seq 642 aa
MLDANKAKPGANSETYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDE
AMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHSTTKISALETVMTVLHAGAKFGGKTYQ
VSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVGVSEGSGTTTIFM
ADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYFEGGITGFVRHLNR
NREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTR
AFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVES
AVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCS
ERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAII
TALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQP
PLYKIKIGSTEHWVYNDAEKEAILAQTKSTKVDIQRYKGLGEMSAEQLWRTTMDPASRTL
LEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLDI

NT seq 1929 nt +upstreamnt +downstreamnt
atgttagatgcaaataaagccaaaccgggtgccaattcagaaacctatacagccagtgat
atccaggtactggaaggtctggccgctgtccgcaaaaggccgggcatgtatatcggctct
acagaccagcgggggttgcatcacctggtttatgaaattgtttataacagcgtagatgaa
gccatggccggggtatgtgaccggattaaggtcataatgtttaaagacggcagtgtcagc
gttgaggataacggccgcggtatcccggtagacattcactctactaccaagatttccgcc
cttgaaacggttatgaccgtcctgcatgccggtgccaaattcggcggcaagacctatcag
gtatccggcggtctgcatggtgtgggtgcttcagtggtaaacgctctgtccgaatggact
acagtcaaggtcaggcgcaacggcaaaatttaccagcaaagctacctgcgcggcaagccc
agcaccccgctggaagaagtgggagtatcagaaggttccggtaccaccactatattcatg
gctgattcacaaatattttccaccacggaatatgactttgaaaccctgactgaccgcctg
cgggagatagcctatctcaacaaggggcttgaggtatatatttacgacgaaaaatctgat
caggaacgtacttattactttgagggtggtattaccggctttgtacgccatctaaaccgc
aaccgcgaagtacgccaccgccagcctatttatataaccaaaaaatccgacagcactatt
ctggaagtagctatccagtacaatgacggctactcggattccacccttacctttgccaac
tgtgtaaataccgtagacggcggtacccacctgaccggttttcgttccgccctgacccgg
gcttttaatgactacgcccacaagtccaaatttcttaaagacaccgacccgaacctgatg
ggtgatgacgtacgtgaaggcatcgtagccatcgtcagcgtcaaactgcccgaaccccag
tttgagggacagaccaagggcaagctgggcaatattgaaataaagagttttgtggaaagt
gccgttgccgaacagctttccctttatctggaagaacatccggatgataccaaacgcata
ttagaaaaatgtataaccgccgccaaggcccgtgaagccgcccgcaaggcccgtgacctg
attatccgcaagagtgctctggatacaggcaccctgcctggcaagctggcagactgctca
gagcgtgatgcttcgctgtgcgaactgtttctggtagagggtgattcagccggtggttca
gccaaacagggccgaaaccgccgctttcaggccatactcccgttacggggtaaaattttg
aacgtagaaaaggcttcacctgacaagatgctggctcacgaagaaatcagggccatcatc
accgctctggcagccggtatagataatgattttgacccctctaaactgcgctacaaccgt
ctggtactcatgacagatgctgatgtggacggctctcatatacggacactccttttaacc
tttttcttccgccatatgccccgccttattaccgaaagccatttattcattgcccagccg
cctctctacaagataaaaataggcagtaccgagcactgggtatacaatgatgctgaaaaa
gaggctatccttgcccagaccaagagcaccaaggtagatatccagcggtataaaggtctg
ggtgaaatgagtgccgagcaactctggaggactaccatggacccggccagccgcaccctg
cttgaagtaaaagtggaagatgccgccaaggctgaccagatttttaacctgctgatgggc
ggtgaagtagctccccgcaaggcctttatccagtctcactcccgcaccgtcaagaacctg
gatatctaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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