KEGG   Pseudodesulfovibrio indicus: AWY79_06105
Entry
AWY79_06105       CDS       T04404                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
dej  Pseudodesulfovibrio indicus
Pathway
dej03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dej00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWY79_06105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dej03019]
    AWY79_06105
   03016 Transfer RNA biogenesis [BR:dej03016]
    AWY79_06105
Enzymes [BR:dej01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AWY79_06105
Messenger RNA biogenesis [BR:dej03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AWY79_06105
Transfer RNA biogenesis [BR:dej03016]
 Prokaryotic type
  tRNA degradation factors
   AWY79_06105
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 AbiEi_4 TBPIP RNase_II_C_S1 CSD Rho_RNA_bind
Other DBs
NCBI-ProteinID: AMK10711
UniProt: A0A126QL58
Position
1307369..1309564
AA seq 731 aa
MVKKKRSQPRPSTPPLSPATLLKLFKEVKRPMSRAEVIRQLKLKKKDKAAVKDMLKELAQ
KGKLVRIRRGYGLAEAMHCITGRLEIQRQGFGFVVPEDSRRKDIFVNQRDLNDAWHGDRV
VVSVVGEPKAGRSAEGRIIRILERGRKVLPAKVIKRMSGGDWLCRPSDPRLNFGIIAALK
DASVKLEPGDIVLCAPGERIDPTMWEGQITQRLGVETDVSVQEALVKSNHNIRTRFPSGS
MGQAESLPPEPSDKDLHSRRDLTAKPFVTIDGATARDFDDAVLVERLKRGYRLWVAIADV
AHYVAEGSPLDREALERGNSYYFPRSVEPMFPERLSNGLCSLNPDVPRLTMVVKMDTDET
GRTVETEIFPAVIRSHARLTYSLVNDAVIEKQDEARRKIAPDLLPMLELAEELARKINAL
RSKRGSLDFDLPEPEIFFDVHGETSDIRPKQRNFAHQLIEEFMIAANEAVAHFLIERDLP
CLFRIHPPADEEKLKNLFRLLSRTDKSVVMPKEITPKKLQMLVASMQGTDKEYIVNRMLL
RSMKQAKYSPDNEGHFGLASEEYAHFTSPIRRYADLVVHRLVKSALQQGEGTPAPIPGRK
KLLNVANHISSRERVAMDAEREILKRVTVLFMHGKVGETFNGVISHITDFGFYVELKEVM
AEGLIRLSTMDDDYYTYWPQREMLVGERTGRAFSLGQAVEVVLEEASIERLELNFSLKSV
VAAAMDYKDLI
NT seq 2196 nt   +upstreamnt  +downstreamnt
atggttaagaagaagcgcagccagcccaggccgagcaccccgcccctgtccccggcgacc
ctgctcaagctgttcaaggaagtgaagcggcccatgtccagggccgaggtcatccgccag
ctcaagctcaagaaaaaggacaaggccgcggtcaaggacatgctcaaggagctggcccag
aagggcaagctggtgcgcatccggcgcggctacggcctggccgaggccatgcactgcatc
accgggcggctggagatccagcgtcaggggttcggcttcgtggtcccggaggactcgcgg
cgcaaggacatcttcgtcaaccagcgggacctcaacgacgcctggcacggcgaccgtgtg
gtggtctccgtggtcggcgaacccaaggcggggcgcagcgccgagggccgcatcatccgc
attctggaacgcggccgaaaggtgctgcccgccaaggtgatcaagcgcatgtccggcggg
gactggctctgccgcccgtccgaccccaggctgaatttcgggatcatcgccgcgctcaag
gacgcgtccgtcaagctcgaaccgggcgacatcgtgctctgtgcgccgggcgaacgcatc
gacccgaccatgtgggagggccagatcacccagcggctcggggtggagaccgacgtctcc
gtccaggaagccctggtcaagtccaaccacaacatccgcacccggttcccgtccggctcc
atgggccaggccgaatccctgccgcccgaaccgtcggacaaggacctccactcgcggcgc
gacctgaccgccaagccgttcgtgaccatcgacggggccacggcccgcgacttcgacgac
gccgtcctcgtggagcggctcaagcgcggctaccgcctctgggtggccatcgccgacgtg
gcccactatgtggccgaaggctcgccgctcgaccgcgaggccctggaacgcggcaactcc
tactatttcccccggtccgttgagcccatgttcccggagcgcctgtccaacgggctgtgc
tccctgaaccccgacgtgccccgcctgaccatggtcgtgaagatggataccgacgagacc
ggccgcaccgtggagaccgaaatcttcccggcggtcatccgcagccacgcccggctgacc
tactccctggtcaacgacgccgtcatcgagaaacaggacgaggcgcgcaggaagatcgcc
ccggacctgctacccatgctggagctggccgaggagctggcgcgcaagatcaacgcgttg
cgctccaagcgcgggtccctggatttcgacctgcccgagccggagatattcttcgacgtg
cacggcgagacctcggatatccggcccaagcagcgcaatttcgcccaccagctcatcgag
gagttcatgatcgcggccaacgaggctgtggcccatttcctcatagagcgcgacctgccc
tgcctgttccgcatccaccctccggcggacgaggaaaagctcaagaacctcttccggctg
ctctcgcgcacggacaagtccgtggtcatgcccaaggagatcacgcccaagaagctccag
atgctcgtggcgtccatgcagggcacggacaaggaatacatcgtcaaccgcatgctcctg
cgctccatgaagcaggccaagtactcgccggacaacgagggccacttcggcctggcctcc
gaggagtacgcccacttcacctcgcccatccggcgctacgccgaccttgtggtgcaccgg
ctggtcaagtccgcgctgcaacagggcgaaggcacgcccgcgcccatcccgggccgcaag
aagctgctcaacgtggccaaccacatctcctcgcgcgagcgcgtggccatggatgccgag
cgcgaaatactcaagcgcgtcaccgtgctgttcatgcacggcaaggtcggcgagaccttc
aacggcgtcatctcgcacatcaccgacttcggcttctacgtggagctcaaggaggtcatg
gccgaagggctcatccggctgtccaccatggacgacgattactacacctactggccgcaa
cgcgagatgctcgtgggcgaacgcaccggccgcgccttctccctcggccaagccgtggag
gtcgtgctcgaagaggccagcatcgaacgcctcgaactcaacttcagcctgaaatccgtg
gtcgccgccgccatggattataaagatttgatttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system