KEGG   Devosia sp. H5989: XM25_11120
Entry
XM25_11120        CDS       T04003                                 
Symbol
LigA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
deq  Devosia sp. H5989
Pathway
deq03030  DNA replication
deq03410  Base excision repair
deq03420  Nucleotide excision repair
deq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:deq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    XM25_11120 (LigA)
   03410 Base excision repair
    XM25_11120 (LigA)
   03420 Nucleotide excision repair
    XM25_11120 (LigA)
   03430 Mismatch repair
    XM25_11120 (LigA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:deq03032]
    XM25_11120 (LigA)
   03400 DNA repair and recombination proteins [BR:deq03400]
    XM25_11120 (LigA)
Enzymes [BR:deq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     XM25_11120 (LigA)
DNA replication proteins [BR:deq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     XM25_11120 (LigA)
DNA repair and recombination proteins [BR:deq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     XM25_11120 (LigA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XM25_11120 (LigA)
   MMR (mismatch excision repair)
    DNA ligase
     XM25_11120 (LigA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      XM25_11120 (LigA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT FdhE zf-GRF
Other DBs
NCBI-ProteinID: AKR56336
Position
complement(2270895..2273102)
AA seq 735 aa
MEFEDEVENLSEAAAKQELDKLHEAILRADIAYHQNDAPEITDAEYDAMKVRYGEIETAF
PQLRRPDSLTGKVGAPAVEGFAKVRHAVPMLSLAKAYTDQDVIDFIERGHRFFERDKDLV
LEFVTEPKIDGLSASLRYENGVFVKGATRGDGTVGEDITANLRTIADIPEKLEGSDWPQV
IEVRGEVYMTYADFEALKARSAAEGGQDYVNPRNTAAGSLRQKDPAITAQRNLRFFAYAW
GEASSMPADTQWGMIQAIKSWGFKVNELTERTASEEEMLRQYRVIEAQRSSLGYDIDGVV
YKLDRLDLRERWGYVTGEPRWAIAHKFPAEQATTVVKRIDIQVGRTGTLAPVARLEPVTV
GGVVVENVTLHNEDYIKGFDSAGAPIRDGIDIRIGDTVVIQRAGDVIPQIVKVVIEKRPA
DAVPYEFPHTCPVCGSPAVREVNEKTGKEDSRRRCTGELICPAQAIEKLRHFVSRGAMDI
EGLGAENIDLFFHAGLVKTAADIFTLRDRRAEVQKALAERREEQARQREAATGKVRKNVR
SVEDRNYEGLEKLFAAIDARREPELDRFIFALGIRHIGSTTAAILARTFSTIEEVIRIGK
ETAAHADDPHAVFPSIDGIGDTVIGALISFFGNEQNDEVIDRLLEEVRPQPYVVTVSAES
QVAGKTVVFTGTLEKMSRSEAKAMAERHGAKVAGSVSSATDILVAGPGAGSKLKKAEELG
IRVVDEDGWFDLIAK
NT seq 2208 nt   +upstreamnt  +downstreamnt
atcgagttcgaggacgaggtcgagaacctttccgaagcggcggccaagcaggagctcgac
aagctccacgaagcgattctgcgcgccgatatcgcctatcaccagaacgacgcgcccgag
atcacggacgccgaatacgatgcgatgaaggtccgctacggtgagatcgagacggcgttt
ccgcagttgcgccgcccggacagcctcaccggcaaggtgggcgcgccggcggtggaaggc
ttcgccaaggtgcggcacgccgtgcccatgctcagcctcgccaaggcctacacggaccag
gacgtcatcgacttcatcgaacgtggccatcggttcttcgagcgggacaaggacctggtg
ctcgaattcgtcaccgaacccaagatcgacgggctttccgcttcgctgcgctatgagaac
ggcgtcttcgtcaagggcgcgacgcgcggcgacggcacggtgggcgaggatatcaccgcc
aacctcaggaccatcgccgacattcccgaaaagctcgagggcagcgactggccgcaggtc
atcgaagtgcgcggcgaggtctacatgacctatgccgatttcgaggcgctcaaggcgcgt
tcggcggccgagggcgggcaggattacgtcaacccgcgcaatacggcagccggctcgctg
cgccagaaggaccccgccatcacggcgcagcgcaacctgcgcttcttcgcctatgcgtgg
ggcgaggcctcgagcatgccggcggatacgcaatggggcatgatccaggccatcaagagc
tggggattcaaggtcaacgagctgaccgagcggacggcctccgaggaggagatgctgcgc
cagtaccgggtgatcgaggcgcagcgctcctcgctcggctacgacatcgacggggtggtc
tataagctcgaccggctcgacctgcgcgagcgctgggggtacgtgacgggcgagccgcgc
tgggccatcgcccacaagttcccggccgagcaggcgacgaccgtggtcaagcgcatcgac
atccaggtcgggcgcaccggcacgctggcgccggtggcgcggctcgaaccggtaacggtg
ggcggcgtggtggtcgagaacgtcacgctccacaacgaggactatatcaagggtttcgac
agcgccggggcgcccatccgcgacggcatcgacattcgcatcggcgatacggtggtcatc
cagcgggccggcgacgtcatcccgcagatcgtcaaggtggtgatcgagaagcgcccggcg
gacgcggtgccctacgagttcccgcatacctgcccggtctgcggatcgccggcggtgcgc
gaggtcaacgagaagacgggcaaggaagattcgcgccggcgctgcacgggcgagctgatc
tgcccggctcaggccatcgagaagctgcgccatttcgtgtcgcgcggcgcgatggatatc
gaggggctgggggccgagaacatcgacctcttcttccatgccgggctggtcaagacggcg
gccgacatcttcacgctcagggatcgccgcgccgaagtgcagaaggcgctggccgagcgg
cgcgaggagcaggcgcgccagcgtgaggcggcaacgggcaaggtgcgcaagaacgtgcgc
agtgtcgaggatcgcaactacgaggggctcgaaaagctcttcgcggctatcgacgcgcgg
cgcgagcccgagctcgaccggttcatcttcgcgctgggtatccgccacatcggcagcacg
acggcggcaatcctggcgcgcaccttctcgaccatcgaggaggtgatccgcatcggcaag
gaaaccgccgcgcatgcggatgatccgcacgcggtgttcccatcgatcgacgggatcggc
gatacggtcatcggggcgctcatcagctttttcggcaacgagcagaatgacgaggtcatc
gaccggctgctcgaagaggtgcggccacagccttatgtcgtcaccgtttcggccgaaagc
caggtggccggcaagacggtggtgttcaccggcacgctcgagaagatgtcgcgcagcgag
gccaaggccatggccgagcggcacggcgccaaggtcgccggttcggtgtcctcggccacc
gatatcctcgtggccggccccggcgcgggctccaagctcaagaaggccgaggaactgggt
attcgggttgtcgacgaagacggttggttcgatctcatcgccaaatag

DBGET integrated database retrieval system