KEGG T04003: XM25

Devosia sp. H5989: XM25_12565

Entry

XM25_12565        CDS       T04003

Name

(GenBank) hypothetical protein

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

deq Devosia sp. H5989

Brite

KEGG Orthology (KO) [BR:deq00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:deq03032]
    XM25_12565
   03400 DNA repair and recombination proteins [BR:deq03400]
    XM25_12565
Enzymes [BR:deq01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     XM25_12565
DNA replication proteins [BR:deq03032]
Prokaryotic type
  DNA Topoisomerases
   XM25_12565
DNA repair and recombination proteins [BR:deq03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      XM25_12565

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact DUF4384

Other DBs

NCBI-ProteinID:

AKR56613

Position

complement(2567399..2568379)

AA seq 326 aa
MSARLRKVTRDDLTIVRKRRGRGFCFLDATGKLVCDAPFKQRMADLAIPPAWRDVHVASR
ANDHIQCVGIDEAGRARYIYHPDWEVRRSARKQRRLAALSVALPRIRRRVRKDLGAPAGS
AELAQAIAVALIDRTAMRVGSEQYLRANGTRGAATLFSRDVVVDGDRVELAFVAKGGKRT
AYALKDRALADAIARIKALPGKRLLVYRDADDIVPLRTRTINAYLRQITGADISAKDFRT
LRASALAAEVLASMEPGASESARKRQIAGVARQVAEVLRNTPAISRKSYIAPALFQLFDS
GKLQVLWSAARGRAEERLGILLAEVA

NT seq 981 nt +upstreamnt +downstreamnt
atgagcgcgaggcttcgcaaggtcacccgcgacgacctgaccatcgtcaggaaacggcgc
gggcgcggtttctgcttcctcgacgctaccggcaagctggtgtgcgatgccccattcaag
cagcgcatggccgacctggcgattccgcctgcctggcgggacgtgcatgtggcgtcccgt
gccaacgaccacatccagtgcgtggggatcgatgaggccgggcgggcgcggtacatctat
catcccgattgggaggtgcgccggtcggcgcgcaaacagcggcggctggcggccctctcg
gtggcactgccgcgtatccggcgccgcgttcgcaaggacctcggcgcgccggccggatcg
gcggaattggcccaagccattgccgtcgcccttatcgatcgaacggcgatgcgggttggc
agcgagcaatatttgcgtgccaacggcacgcgcggcgcggcaacgctgttttcgcgcgat
gtcgtggttgacggcgacagggtggagcttgccttcgtcgccaagggtggcaagcgcacg
gcctatgcgctcaaggaccgggcgctggccgacgccattgcgcggatcaaggctctgccg
gggaaacgccttctcgtctatcgggacgcggacgacatcgtgccgttgcgcaccaggacc
atcaacgcgtatctgcgccagatcacgggtgccgacatttcggccaaggatttccgtacg
ctgcgtgccagcgcgctcgccgccgaggtcttggcgagcatggagcccggggcttcggaa
tcggcacgaaagcggcagatcgccggggtcgcccgccaggtggcggaagtgttgcgcaac
actcccgccatcagccgcaaaagctacatcgccccggcgctgttccagctctttgacagc
ggcaaactgcaggttctctggtcggccgcccgcgggcgggccgaggaacgcctcggtatc
ctcctggcggaggtggcctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

Download RDF

DBGET integrated database retrieval system