KEGG   Dehalococcoides mccartyi VS: DhcVS_1234
Entry
DhcVS_1234        CDS       T01136                                 
Name
(GenBank) 2 -5 RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
dev  Dehalococcoides mccartyi VS
Brite
KEGG Orthology (KO) [BR:dev00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dev03016]
    DhcVS_1234
Enzymes [BR:dev01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     DhcVS_1234
Transfer RNA biogenesis [BR:dev03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    DhcVS_1234
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS Vps52_CC
Other DBs
NCBI-ProteinID: ACZ62341
UniProt: D2BJ41
Position
1139392..1139973
AA seq 193 aa
MAEELVRTFIAIELPPELKTALGSFQNSLSIPTQAVKWVNPESMHLTIKFLGDTQLGQIS
NIIKGLEKAAQVCSSFSLCTNRIGAFPSLSSPKIIWLGLEGEIEKLNTLFAEVEKNISGL
GFPAEQREFAPHLTLGRLRESASKIDLQTAAETLKTTPPVPKTSFKATHIHLFKSQLLPA
GPIYTKLAKISLA
NT seq 582 nt   +upstreamnt  +downstreamnt
ttggctgaagaacttgtccgcacgtttattgccatagaactgccgcctgagcttaaaacc
gcactcggcagtttccagaattccctttccatacccacccaagctgtaaaatgggtaaac
cccgaatcaatgcacctaaccatcaaatttttgggggatacacagctaggccaaatatca
aatatcataaaagggctggagaaagccgcgcaggtttgctcttccttttccctatgcacc
aaccgtataggggctttcccctcactttcaagcccaaagataatctggctggggctggag
ggtgagatagaaaaactaaataccctctttgcggaggttgaaaaaaatatttcagggctg
ggatttccggcagaacaaagggaattcgccccccacctgaccttaggacgtcttagggaa
agtgcttccaaaattgacctgcaaaccgctgccgaaacccttaaaaccacaccccctgtt
cctaaaaccagtttcaaagccacccatatccatctctttaaaagccagcttttacccgca
gggccaatatacaccaagctggccaaaatcagccttgcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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