KEGG   Cavenderia fasciculata (cellular slime mold): DFA_11249
Entry
DFA_11249         CDS       T02668                                 
Symbol
rfa1
Name
(RefSeq) putative ssDNA-binding protein
  KO
K07466  replication factor A1
Organism
dfa  Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03030  DNA replication
dfa03420  Nucleotide excision repair
dfa03430  Mismatch repair
dfa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DFA_11249 (rfa1)
   03420 Nucleotide excision repair
    DFA_11249 (rfa1)
   03430 Mismatch repair
    DFA_11249 (rfa1)
   03440 Homologous recombination
    DFA_11249 (rfa1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dfa03000]
    DFA_11249 (rfa1)
   03032 DNA replication proteins [BR:dfa03032]
    DFA_11249 (rfa1)
   03400 DNA repair and recombination proteins [BR:dfa03400]
    DFA_11249 (rfa1)
Transcription factors [BR:dfa03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    DFA_11249 (rfa1)
DNA replication proteins [BR:dfa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    DFA_11249 (rfa1)
DNA repair and recombination proteins [BR:dfa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     DFA_11249 (rfa1)
   MMR (mismatch excision repair)
     DFA_11249 (rfa1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     DFA_11249 (rfa1)
SSDB
Motif
Pfam: REPA_OB_2 tRNA_anti-codon TFIIA eIF-3_zeta TT_ORF1 Lin-8
Other DBs
NCBI-GeneID: 14865587
NCBI-ProteinID: XP_004350192
UniProt: F4QFN5
Position
Unknown
AA seq 669 aa
MDVSLNQQSNNSKKIIGPSQKAIIICNHISMYKVEFLEGVHFINFFLSQIFAVITDGATK
FPTVLPSNNTLREFQIIRLNSFAVMQGKRYVQIFNYDVLADLQSLINNNNLTYHTVYSAQ
QQQQQQQKQQIQQTGGQQQPQQQQQQQQQQQYQQQRNNNNNNNQYNNNNNNNYNNNNYNN
NNNGGNYRQPQVSSSQGNSNQNNICDIDALSEGMGSYTICAVVKNKSDIKEWKNVTSSGR
LFSVEFADDSPSTCNTIKATVFGDPYCASLHQQLEAGKTYMVSGSGGVRKNSQKFNNTKH
QYELTLGRDTTITPVTDQSQVIKSAGVVKFQFTPINSLVSLGANMMVDVLGEVTSVSTPI
DITTKATERAKSKVLPKWAITIRDNTNSGIEVSFWGDDVAKYLNQITVGMIVGIKNAKLT
QFNGHSLSFGYSSEIVLDPRHLDQYEGFRQWIAHNSGTNCASLTQRSTFTGNSTNKDAPV
LTVAELLAIQTEPFDANNNPNQYVVHGTIRRGAFAKEISRDNGPTVSTCWYEGCAGCFKK
VCGGLPKCEAPRMTNIWKLPIKIADDTGTLSNVDLFQSIALPILGPISDYEHLDSTAFIA
KLDKELGFEAKVVVKYSQTTGNAPAGGDGTTTYHRYSVHQLERTTGAHLQNIARDLAFAL
TSVVIPDEQ
NT seq 2010 nt   +upstreamnt  +downstreamnt
atggatgtatcactcaatcaacaatcaaacaattccaaaaaaatcattggtccttcccaa
aaagctataatcatctgtaaccatatctcaatgtataaagtcgagtttttggagggagtt
catttcattaacttttttttatctcaaatttttgcagtgataactgatggagctaccaag
ttcccaacagtattaccaagcaacaatacactcagagaatttcaaatcatccgtctcaat
tcatttgctgtgatgcagggcaaaagatacgtgcaaatcttcaactatgatgtacttgca
gatctccagagtttgattaataacaacaaccttacctaccataccgtctactctgctcaa
caacaacaacaacagcaacaaaagcaacaaattcaacaaactggtggtcaacaacaacca
caacaacaacaacaacaacaacaacaacaacaataccaacaacaacgaaataataataat
aataataatcaatataacaataataataataataactataataataataactataataat
aataataatggtggtaattatagacaaccacaagtatcatcatcacaaggtaacagtaat
caaaacaatatatgtgatattgatgcattgtctgagggaatgggttcatacacgatttgt
gcagtagtcaagaacaagtcagacatcaaggagtggaagaatgtgacaagtagtggaaga
ttgttttcggtcgagtttgccgacgacagtccctcgacatgcaacacgatcaaggcgacc
gtgtttggcgacccctactgcgcctctttgcatcaacaactagaggctggcaaaacttac
atggtatctggtagtggtggtgtgcgcaagaactcgcaaaagttcaacaataccaagcat
cagtacgagctgacccttggacgagacaccacgatcacccccgtcaccgaccagtcgcag
gtgatcaagtcggctggcgttgtcaagttccaattcacccccatcaactcgttggtctct
ctcggcgccaacatgatggtcgatgtactcggcgaggtgacgagcgtgtccactccaatc
gacatcacaaccaaggctacagagagggccaaaagcaaagttctgcccaagtgggccatt
accatccgtgacaacaccaactcgggcattgaagtgtcgttttggggtgatgacgtcgcc
aagtatctcaaccagattactgtaggcatgattgtcggtatcaagaatgccaagctcacc
caattcaacggacactcgctcagcttcgggtactcatccgagattgtcttggatccacgt
catctcgaccaatacgaggggttccgtcaatggatcgcccacaacagcggcacaaactgc
gccagtctcacccaacgctcgacctttactggcaacagcacaaacaaggacgcacctgtc
ctgaccgtcgccgaattgctcgcaatccaaaccgagcctttcgatgccaacaacaacccc
aaccaatacgttgtccatggtaccattcgccgtggtgcttttgccaaggagatctccaga
gacaacggtccaactgtcagcacatgttggtacgaaggatgtgcaggttgtttcaaaaaa
gtttgtggaggtcttcctaaatgtgaagctccacgtatgaccaatatttggaaactacca
attaaaatagcagatgatactggaactctcagcaacgttgacttgttccaatctattgcc
ctccctattttgggccctatcagtgattatgaacatttagattccactgcattcattgcc
aaacttgacaaggaattaggttttgaagccaaagttgttgtaaagtactctcaaactacc
ggaaatgcacctgcaggtggtgatggaacaacaacttatcaccgttacagtgtacatcaa
ctcgaacgtaccaccggagcacatttacaaaatattgctcgtgatctagcctttgcactc
acttctgttgtcattccagatgaacaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (50)   

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