KEGG   Desulfovibrio fairfieldensis: AXF13_00260
Entry
AXF13_00260       CDS       T04293                                 
Name
(GenBank) HD family phosphohydrolase
  KO
K00970  poly(A) polymerase [EC:2.7.7.19]
Organism
dfi  Desulfovibrio fairfieldensis
Pathway
dfi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dfi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AXF13_00260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dfi03019]
    AXF13_00260
Enzymes [BR:dfi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     AXF13_00260
Messenger RNA biogenesis [BR:dfi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     AXF13_00260
SSDB
Motif
Pfam: HD tRNA_NucTran2_2 PolyA_pol_RNAbd MIOX
Other DBs
NCBI-ProteinID: AMD88679
UniProt: A0A0X8JH81
Position
complement(67747..69078)
AA seq 443 aa
MHQALKEAITICKTLLRNGYDAHVINAPLQEQLLRAVRQPAVDIACEPDMDTLVKLFPKA
RMESEKRALAELEENGVLFRFYPLEVADAGHPELSLLRITPSMAAMMDPKEREQLRMTGF
GSPAPTGDAYEGFADFKGGTIRLTGLPDETLRHNYLLAVRALRFAANFDIPIDPNTWMAI
VRSSVRVLDYVPATDIMDEWRKVAAESMYRFVRLLYDAHILQGLIPEVAALSCVCQERDR
DGVEVNVFDHTLECMKHYPEEGFHYDWLGTMAMLFHDVGKLFTGEYFDGQWTFYQHHRVG
AKVTRKILRRLHFAQEDIDLLCHLVNHHMRFHFMMTDRGIRRFKALDEYPRLIAMARADL
QAREGSYTSFNHNMKYLDRAETPEQMLEPLLNGNEIMSETRLAPGPMVGVIRDALLQAQI
TGEVTDLESAVAFVREYARKSVG
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgcatcaagcgctcaaagaagccatcaccatctgcaaaaccctgctgcgcaacggctat
gacgcgcatgtcatcaacgcgcccctgcaggagcaactgttgcgcgccgtccggcagccc
gccgttgacattgcctgcgagccggatatggacaccctggtcaagctcttccccaaggcc
cgcatggagtcggaaaagcgtgcgctggccgaactggaggaaaacggggtgcttttccgt
ttctatccgctggaagtggcggacgccgggcatccggagctttcgctgctgcgcatcacg
cccagcatggccgccatgatggaccccaaggaacgcgagcaactgcgcatgaccggtttc
ggcagcccggcccccaccggcgacgcctatgagggctttgccgatttcaagggcggcacc
atccggctcaccggcctgccggacgaaaccctgcgtcacaactacctgctggccgtgcgg
gccttgcgcttcgcggccaacttcgacatccccattgatcccaacacctggatggcgatt
gtgcgctcctcggtgcgcgtgctggactacgtgcccgccacggatatcatggacgaatgg
cgcaaggtggccgccgaatccatgtaccgcttcgtgcgcctgctttacgacgcccatatt
ctccaaggcctgatcccggaagtggcggcgctctcctgtgtctgccaggagcgcgacagg
gacggcgtggaggtgaatgtcttcgaccacaccctggaatgcatgaaacactacccggaa
gaaggtttccactacgactggctgggcaccatggccatgctctttcacgatgtgggcaag
ctcttcaccggtgaatatttcgacggccagtggaccttctaccagcaccaccgggtgggg
gccaaggtcacgcgcaagatcctgcgccgtctgcacttcgcccaggaggacatcgacctg
ctctgccacctggtgaaccaccacatgcgcttccacttcatgatgaccgacaggggcatc
cgccgctttaaggccctggacgaatatccacgccttatcgccatggcccgtgccgacctt
caggcccgcgaaggcagctatacgtccttcaaccacaatatgaaatatctggaccgggcc
gaaaccccggaacagatgctggaacccctgctcaacggcaatgaaatcatgagcgaaact
cgtctggcccccggccccatggtgggtgtgatccgcgacgcgttgctgcaggcccagatc
acgggcgaagtgacggatctggaatccgccgtggcctttgtgcgtgagtatgcgcggaag
tccgtggggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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