KEGG T01827: DGo

Deinococcus gobiensis: DGo_PA0005

Entry

DGo_PA0005        CDS       T01827

Symbol

dbpA

Name

(GenBank) ATP-dependent RNA helicase, putative

K11927

ATP-dependent RNA helicase RhlE [EC:5.6.2.7]

Organism

dgo Deinococcus gobiensis

Pathway

dgo03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:dgo00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DGo_PA0005 (dbpA)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dgo03019]
    DGo_PA0005 (dbpA)
Enzymes [BR:dgo01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     DGo_PA0005 (dbpA)
Messenger RNA biogenesis [BR:dgo03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DGo_PA0005 (dbpA)

SSDB

Motif

Pfam:

Helicase_C DEAD CMS1

Other DBs

NCBI-ProteinID:

AFD26891

UniProt:

H8H0M2

Position

P1:3896..5050

AA seq 384 aa
MSAGRITGGITPRQTRSEATGKGLIAGTPGRLKDLINQGELSLAGLRYVVLDEADELLSL
GFLRDVGDILRAAKQEARGPERLQVAMASATFPAEIRQVAERFMEKPERIDIAPARSAEA
AGDGDILGGATGATHLLVNTVREDLLDIAAEQAREMLRAPGGCVVIFCRTKALVKRRAER
LGELLPGETVSALQGNMDQKKRERTMDLLREGQSRVLVATDIAGRGIDLPEVRIVIHLDV
ASTAEDHVHRSGRTARAGRPGTNLVLLIPEQRALWQSVRRGLPAALHPPMSREEAQIDRE
IQEKQGQRGQGGGGRGQGQGGGGRGASQPRQAQSGQAGQRQSRPDAPHRDGGSSGNRGRA
PEPAGVGGGRVGPQPARGRGGRRR

NT seq 1155 nt +upstreamnt +downstreamnt
atgagcgccgggcgcatcacggggggcatcacgccgcgccagacccgcagcgaggcgacc
ggcaagggattgatcgccggcacgccgggccgcctcaaggacctcatcaaccagggcgaa
ctcagcctcgcggggctgcgttacgtggtgctcgacgaggccgacgagctgctgtcgctg
ggcttcctgcgcgacgtgggcgacatcctgcgcgctgccaagcaggaggcccgcggtccc
gaacgccttcaggtggcgatggcctccgcgaccttcccggccgagatccggcaggtggcc
gagcgcttcatggagaagcccgagcgcatcgatatcgccccggcccgcagcgccgaggcg
gccggcgacggcgacatcctgggcggggcgaccggcgcgacccacctgctcgtcaatacc
gtgcgcgaggacctgctggacatcgccgccgagcaggcccgcgagatgctgcgcgcgccc
ggcggctgcgtggtgatcttctgccgcaccaaggccctggtcaaacgccgcgccgagcgt
ctgggcgagctgctgccgggcgagacggtcagcgcgctgcagggcaacatggaccagaag
aagcgcgagcgcaccatggacctgctgcgcgagggccagtcgcgcgtgctcgtggcgacc
gacatcgccggacgcggcatcgacctgcccgaggtccgcatcgtgatccacctcgacgtg
gcctcgaccgccgaggaccacgtgcaccgttcgggccgcaccgcgcgtgctgggcgcccc
ggcaccaacctcgtgctgctcatccccgagcagcgcgccctgtggcagagcgtgcgccgg
ggcctgcccgccgcgctgcacccgcccatgagccgcgaggaggcccagatcgaccgcgaa
attcaggaaaagcagggccagcgcggtcagggcggcggtggccggggccagggccagggc
ggcggtggccgcggagcgtcgcagccccggcaggcccagtcaggtcaggctgggcagcgc
cagtcgcggccggacgccccgcaccgtgacggcgggtcgtccggcaaccgggggcgcgcg
cccgaacccgccggtgtcggtgggggccgtgtggggccgcagcccgcacggggccggggt
ggccgccgccgctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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