KEGG   Dickeya poaceiphila: Dpoa569_002740
Entry
Dpoa569_002740    CDS       T06188                                 
Name
(GenBank) exonuclease subunit SbcC
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
dic  Dickeya poaceiphila
Brite
KEGG Orthology (KO) [BR:dic00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dic03400]
    Dpoa569_002740
DNA repair and recombination proteins [BR:dic03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Dpoa569_002740
    Archaeal homologous recombinant proteins
     Dpoa569_002740
SSDB
Motif
Pfam: AAA_23 SbcC_Walker_B SMC_N AAA_29 AAA_15 ABC_tran cobW AAA_21 TsaE NTPase_1 nSTAND3 GTP_EFTU zf-Mss51 AAA_22 RsgA_GTPase AAA_25
Other DBs
NCBI-ProteinID: QDX30828
UniProt: A0A5B8IB05
Position
3037217..3040900
AA seq 1227 aa
MKILSLRLKNLNSLQGEWKIDFTREPFVNNSLFAITGPTGAGKTTLLDAICLALYHQTPR
LKVSPSQNELMTRHTAECLAEVEFEVKNVAYRAFWSQHRAHNSPEGNLQPPKVEMALCAS
GKILTDKVNEKLAMIADITGLDFDRFTKSMMLSQGQFAAFLNADANQRAELLEELTGTDI
YGQISERVFEKHKEAQNQLETLRAKVATLELLSDEQRQELEQQLEAIRQQEQSLSLHREE
ILAHQRWYETLLQLQQTQKQAQQQQTAQQQLQQQSQPQLDKLQRSEPAEKLRPRYDERAR
AQREKQRLTQQLTSVHQQIRRQQDTLNLLKIQLEKALSARQQHAEQRQQQETLINERILP
LDHRIATLQAQRAQQQQTLDNLLEQQKTLIAGVARLQRQQEQAQQRLQDIETYRQRHSRH
QHLGSHIPLWQTQFPQQVKWQQDLHVLQEKAAAQQIQAEYLDQQRASLAEKHQAQQSACE
RAQQLLNDHLQQDKQLEAEHPLADLRQQLAQRMAERPDRQQLATGVAVLQQLISQRTLLE
AQQLDTQRRVQALEDQQQQQRQDYQRQAEHLADLDKRYELEQHIVSLERERQQLQPGKEC
PLCGSPHHPAVERYQALRPSETQLRLYVLRQEVEALKASVVQTETQLQLQKQHRQQQQNS
LESVQRDFESLRLQCQSVSKRLLVDFDPLQLSALHQWIETCDAQEQSLQAHIASRERNQR
HIQESKDLLTSAQQLLAQTLQQLELNTQQHASLQASREELRLLLEKTENELQRLHDSLSQ
TLDTFGLTMPTFALQEEWLRQRQTEWLRWQENEHEQHQCKPQLAALEAEIIASQQRLEET
EAAIKTGQQQLAETQRTLEQAQQQRWQLLGNQAVNDVLKQLRQVSQTLELESQQAQQQWQ
QGQSLQSRLSGEIGSLEQQNQHADAALQQLQAQFEEELTAAGFSDEAAFRQALMDEAERH
QLIALKERLSQRQQQVDALLQQADSALEQHMTTRPESMPEGINDWDIRQLISSLGDMVKV
EVERQGELRQQLTSDQQRRDKQRQLLEAITRGQQVCDDWGYLNQLIGSQKGDKFRRFAQG
LTLDHLVFLANRQLSRLHGRYLLQRKASDTLELQVADTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSAKTRIDSLFLDEGFGTLDGETLDTALDVLDNLNASGKTIGVISHVEAMK
DRIQVQIRVRKRNGLGISQLDSTYAVK
NT seq 3684 nt   +upstreamnt  +downstreamnt
atgaagattcttagcctgcgtctgaaaaaccttaactcgttgcagggcgaatggaaaatc
gacttcacccgcgagcccttcgtcaacaatagtctgttcgccattaccggtcccaccggt
gcaggtaaaacgacattgctggacgccatctgcctggcgttgtaccaccagacgccacgc
ctgaaggtcagccccagccaaaacgaactgatgacgcgccacaccgccgagtgtctggcc
gaagtcgaattcgaggtgaaaaacgtcgcctaccgcgccttctggagccagcaccgcgcc
cacaacagcccggaaggcaacctgcaaccgcccaaagtagagatggcgttgtgtgccagc
ggcaagattctcactgataaggtgaacgaaaagctggcgatgatcgccgatatcaccggt
ctggattttgatcgtttcaccaaatcgatgatgttgtctcaggggcagtttgccgctttc
ctcaacgccgacgccaatcaacgggccgaattgcttgaagaactgaccggcaccgacatc
tacggtcagatctcagagcgggtattcgagaagcataaagaggcccagaaccaactggaa
accttgcgggcaaaggtcgccacgctggaattgctgagcgatgaacagcgccaggaactg
gagcaacaactggaagccatccgccagcaggagcaatcactgtcgttgcaccgggaagaa
atactggcgcatcagcgttggtacgagacgctgctgcaactccagcagacacagaaacag
gcacagcagcagcaaaccgcgcaacagcaattacagcaacaatcgcaaccgcaactggat
aaattgcaacgtagcgaaccggcggaaaagttgcgcccacgctatgacgagcgcgcacgc
gcgcagcgggaaaagcagcggctaacccagcaattgacgagtgttcaccaacagatcaga
cgccagcaggacacactcaatctactgaaaatacagctggaaaaagcgttgtctgcccgt
cagcagcacgccgaacagcgccagcagcaggaaaccctgattaatgagcgaattctgccg
cttgaccaccgcatcgccaccttgcaggcacagcgcgcccagcagcagcaaacgctggat
aatctgcttgagcaacaaaaaacgctgattgccggcgtggccagattgcagcgccagcaa
gaacaggcacaacagcggttgcaagacatcgaaacctatcgccagcgacatagccgccat
cagcatctgggcagccatattcctttgtggcaaacgcaatttccccagcaggtgaaatgg
cagcaggatttacacgtgttgcaggaaaaagcagcagcgcaacagattcaggcagagtac
cttgaccagcagcgcgcctcactggcagaaaaacatcaggcgcagcagagcgcctgcgaa
cgcgcccaacaactgctgaacgatcatctgcaacaggataagcaactggaagcggaacac
ccgctggcagacctgcgccagcaactggcgcagcgcatggcggaacgacccgatcgtcag
caactggctaccggcgtcgccgtgctgcaacagctgatcagtcagcgcaccttgctggaa
gcacaacagcttgatacccaacggcgtgttcaggcgttggaagatcaacaacagcaacaa
cgtcaggactatcagcgccaggctgagcatctggcggatctcgacaagcgttatgaactg
gaacagcacattgtcagcctggaacgtgaacgccagcaattacagccgggcaaagagtgt
ccgctatgcgggtcgcctcatcacccggcggtagagcgctatcaggcgttgcggccatcg
gaaactcaacttcggttgtacgtattgcgtcaggaagtggaggcgctaaaagccagcgtc
gtgcagaccgaaacccagttgcagttgcaaaaacaacaccgccaacagcagcaaaattcg
cttgagagtgtccagcgcgatttcgagtcgctgcggctacagtgccagtctgtcagtaaa
cgcttacttgttgacttcgatccgttacaactgtcagcactgcaccagtggattgaaact
tgtgacgcgcaggaacagtcgctgcaggcacacatcgccagccgtgagcgcaatcagcgc
catattcaggaaagtaaggatttactgacttcagcgcagcagctgctggcgcaaacctta
caacaactggaactgaacacccagcagcacgcctctttgcaggcatcacgggaagaactg
cggttattactggaaaaaaccgaaaacgaattgcagcgtctgcacgacagtctcagccag
acgctggacaccttcgggctaaccatgccgacgttcgccctgcaggaagagtggctacgc
caacgtcaaacggaatggctgcgctggcaggaaaacgagcacgaacagcatcagtgcaag
ccgcaactcgccgcactggaagctgaaatcatcgccagtcagcaacggctggaagaaacc
gaggcagccatcaaaaccggtcagcaacagttagcagaaacccaacgcacgctggaacaa
gcccagcaacaacgctggcaattgctcggcaatcaggccgtcaacgatgtactgaagcaa
ctgcggcaagtcagccagactctggagctggagagccagcaggcgcaacagcaatggcaa
caagggcaatcgctgcaaagtcgccttagcggtgaaatcggcagtctggaacagcaaaac
caacatgccgacgccgcgttgcaacaacttcaggctcagtttgaggaagaactcaccgcc
gccggattcagtgatgaagcggcttttcgccaggcgttgatggacgaagccgaacgccat
caactcatcgcgctaaaagagcgactcagccaacgccagcaacaggtagatgccttgtta
caacaggcggatagcgcgctggagcaacatatgacgactcgcccggagtcgatgccggaa
ggcatcaatgactgggatattcgtcagttgatctccagcctcggagacatggtaaaagtc
gaagtcgaacgccagggtgagctgcgtcaacagctgaccagcgatcagcaacgccgcgat
aagcagcgccagttactggaagcgatcacacgcggtcagcaagtctgcgatgactggggc
tacctcaatcagctaatcggatcgcagaaaggcgataaattccgccgcttcgctcaggga
ttgacgctggatcatctggtatttctggccaaccgtcagttatcgcgcctgcatgggcgc
tacctgctgcaacgcaaagcgtccgacacgctggagctgcaagtggccgatacctggcag
gctgatgctatccgcgatacccggacactgtcgggcggcgaaagttttctggtcagcctg
gcgctggcactggcattgtccgatttggttagcgctaaaacccgcatcgactccctgttc
cttgacgaaggtttcggcacactggacggcgagacgctggataccgcactggacgtgctg
gacaatctcaacgcctccggtaaaaccatcggcgtaataagccatgtggaagcgatgaaa
gaccgcatacaggtgcagatccgggttagaaaacgcaacggtcttggcatcagccagctc
gacagcacttacgctgtgaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (22)   

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