KEGG T05390: C3V38

Dietzia sp. oral taxon 368: C3V38_14560

Entry

C3V38_14560       CDS       T05390

Name

(GenBank) 3'-5' exonuclease

K03684

ribonuclease D [EC:3.1.13.5]

Organism

dit Dietzia sp. oral taxon 368

Brite

KEGG Orthology (KO) [BR:dit00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:dit03016]
    C3V38_14560
Enzymes [BR:dit01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     C3V38_14560
Transfer RNA biogenesis [BR:dit03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    C3V38_14560

SSDB

Motif

Pfam:

DNA_pol_A_exo1 DNA_pol_A_exoN HRDC

Other DBs

NCBI-ProteinID:

AVM65411

UniProt:

A0A2S0LYR8

Position

3113809..3115047

AA seq 412 aa
MSGRRRGETPPGAAPPPAEYEFIDDLSGIGAVVDALDASSEPIAVDVERASGIRYSERAF
LLQLRVPGEPALLVDPETPGRTVGPLATVLSERPLLFHAASQDLPSLRELGIHPTSLVDT
ELAGRFLGIERVNLAAMISEHLGIGLAKAHSAADWSRRPLPAAWLDYAAYDVLFLHELAD
EVLPRLDALGRREWFEAECRHLVDSVPAPAAADPWRRLTRLSSLRDARQLARARELWMAR
DRVAAERDIAPKRLLADAAVIEAARVGPTSRSALLAIDGFDGPQRRRLVGEWLAALEWAD
GLGREDLPTRQGPPAEHPPHASWKRNEPEAAALLDVAREAIAALADDLGIDQGLLLKPST
LRLWVWRAATTTPADDAELLHEVLREEEAREWQIELTTGPLLEAVRRFRAVS

NT seq 1239 nt +upstreamnt +downstreamnt
gtgagcgggcgccgccgcggcgagaccccgcccggggcggcgcctccccctgccgagtac
gagttcatcgacgacctctccgggatcggtgcggtcgtcgacgccctggacgcgtcgtcc
gagccgatcgcggtggacgtcgaacgcgcctccgggatccgctactccgagcgcgcgttc
ctcctccagctccgcgtccccggcgagcccgccctgctcgtggacccggagaccccgggc
cggaccgtcggaccgctcgccaccgtcctctcggagcggccgctgctgttccacgccgcg
agccaggacctgccgtccctccgcgagctcggcatccatcccacgtcgctggtggacacc
gagctcgccggccggttcctcgggatcgagagggtcaacctcgccgccatgatctccgag
cacctcgggatcgggctggccaaggcgcactcggccgcggactggtcccgccggccgctg
cccgccgcgtggctcgactacgcggcctacgacgtgctgttcctccacgaactggcggac
gaggtgctgccccgactcgacgccctgggccgccgtgagtggttcgaggcggagtgtcgg
cacctcgtcgactcggtcccggccccggccgccgccgacccctggcgacgtctgacgcgc
ctgtcgagtctgcgcgacgcccgccagctggcccgcgcgcgggagctgtggatggcccgc
gaccgcgtggccgccgagcgggacatcgcccccaagcgactgctggccgacgccgccgtc
atcgaggccgcacgggtaggcccgaccagccggtccgcgctactggcgatcgacggtttc
gacggcccgcaacgcagacgcctggtcggcgaatggctggccgcactggaatgggccgac
gggctcggccgcgaggacctgccgacacgtcaggggccgcccgccgagcatcccccgcac
gcgtcctggaagcgcaacgagccagaggccgccgcgctcctggacgtcgcgcgggaggcg
atcgccgctctcgccgacgacctgggcatcgaccaggggctgctcctcaagccttcgaca
ctgcggctgtgggtctggcgtgcggcaaccaccactcccgccgacgacgccgaactgctc
catgaggttctgcgtgaggaagaagcacgcgagtggcagatcgagttgacgaccggcccc
ctgctcgaggcggtgcgccggttccgggcggtgagctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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