KEGG   Dietzia sp. JS16-p6b: CT688_12150
Entry
CT688_12150       CDS       T05397                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
diz  Dietzia sp. JS16-p6b
Pathway
diz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:diz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CT688_12150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:diz03021]
    CT688_12150
   03400 DNA repair and recombination proteins [BR:diz03400]
    CT688_12150
Enzymes [BR:diz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CT688_12150
Transcription machinery [BR:diz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CT688_12150
DNA repair and recombination proteins [BR:diz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CT688_12150
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AVZ40109
Position
complement(2651979..2655488)
AA seq 1169 aa
MLEGPILAVSRQTKSVSTVPGAPRRVSFAKLSEPLPVPGLLDLQTESFEWFIGSEEWQQR
AASRGVTNLEGGLESILREISPIEDFSGSMSLSFSDSYFEEVKASMEDCREKDRTYEAPL
FVTAEFENTETGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDRSRDK
STERDVHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQSVTVLLKALGWTTTEIKERYG
FSEIMMSTLEKDTVEDTDQALLEIYRKLRPGEPPTRESAEALLENLFFKEKRYDLARVGR
YKVNRKLGLPDPEGDDTTTLTREDIAATIEYLVRLHAGETSMQVPGGREVPVDVDDIDHF
GNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDSEAITPQSLINIRPITAALKEFFGT
SQMSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRRVVDGAVTDQVDYLTADEEDRHVVAQANSEIDENGR
FVEDRVLVRKKHGDVEVVAGTDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QSVPLVRSESPLVGTGMELRAAVDAGDVVVNTRAGVVEEVSADFITVMDDDGGRQTYRLA
KFARSNQGTCSNQKPIVDEGMRVEAGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDDRGIVRIG
AEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVF
SRDDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPAEDMPFMPDGTPV
DIILNTHGVPRRMNIGQIMETHLGWLAKAGWEVPREADGSLPEWASKLPEEIHSVEAGTN
TATPVFDGAADTEITGLLGCTLPNRDGERMVEADGKATLIDGRSGEPFPYPVSVGYMYIL
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGQAVSLGEGA
EDDDLDRTAANLGINLSRDESSAADELAQ
NT seq 3510 nt   +upstreamnt  +downstreamnt
gtgctggaaggacccatcttggcagtctcccgccagaccaagtcagtttccaccgttccc
ggtgcgccccggagggtctcgttcgcgaaactctccgagccgttgccggtcccgggactg
ctcgacctccagacggagtcgttcgagtggttcatcgggtcggaggagtggcagcagagg
gccgcgtcccgcggcgtcacgaacctcgagggaggcctggagtcgatcctcagggagatc
tccccgatcgaggacttctccggatccatgtcgctctcgttctccgattcgtacttcgaa
gaggtcaaggcctcgatggaggactgccgcgagaaggatcgtacgtacgaggcgcccctg
ttcgtcacggccgagttcgagaacaccgagacgggcgagatcaagtcgcagaccgtcttc
atgggtgacttcccgatgatgacggacaagggcacgttcatcatcaacggcaccgagcgc
gtcgtcgtctcgcagctcgtccgctcgcccggcgtctacttcgaccggagccgcgacaag
tcgacggagcgggacgtccactccgtgaaggtcatcccgtcgcgcggtgcgtggctggag
ttcgacgtggacaagcgcgacacggtcggcgtgcgtatcgaccgcaagcgccgtcagtcc
gtgaccgtgctgctcaaggccctcggctggaccaccaccgagatcaaggagcgctacggc
ttctccgagatcatgatgtccaccctcgagaaggacacggtcgaggacacggaccaggcc
ctgctcgagatctaccgcaagctgcgtccgggtgagccgccgacccgcgagtccgcggag
gcgctcctggagaacctgttcttcaaggagaagcgctacgacctggcccgcgtcggccgc
tacaaggtcaaccgcaagctcggtctgccggatcccgagggcgacgacaccaccacgctc
acgcgtgaggacatcgccgccaccatcgagtacctcgtgcgcctccacgcgggcgagacg
tcgatgcaggtcccggggggccgcgaggtcccggtcgacgtcgacgacatcgaccacttc
ggaaaccgtcgtctgcgcaccgtcggcgagctcatccagaaccaggtccgcgtgggcctg
tcccggatggagcgcgtggtccgtgagcggatgaccacgcaggactccgaggcgatcacc
ccgcagtcgctgatcaacatccggcccatcaccgccgcgctcaaggagttcttcggaacc
tcccagatgtcgcagttcatggaccagaacaacccgctgtcgggcctgacccacaagcgg
cgcctgtccgccctgggccccggtggtctgtcgcgtgagcgcgccggcctcgaggtgcgc
gacgtgcacgcctcgcactacggccgcatgtgcccgatcgagacccccgagggtccgaac
atcggtctgatcgggtcgctctcggtctacgcccgggtcaacccgttcggcttcatcgag
accccgtaccgccgggtcgtcgacggcgcggtcaccgaccaggtcgactacctcaccgcc
gacgaggaggaccgccacgtcgtggcgcaggccaactcggagatcgacgagaacggcagg
ttcgtcgaggaccgcgtcctcgtgcgcaagaagcacggtgacgtcgaggtcgtcgcgggc
acggatgtcgactacatggacgtctcgccgcggcagatggtctccgtggccaccgccatg
atcccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgcagcgt
cagtcggtcccgctcgtgcggtccgagtcgccgctcgtcggcaccggcatggagctgcgc
gcggccgtggacgccggcgacgtcgtcgtcaacacccgtgcgggcgtggtggaggaggtc
tcggccgacttcatcaccgtcatggacgacgacgggggacgtcagacctaccgcctggcc
aagttcgcgcggtccaaccagggcacgtgctccaaccagaagccgatcgtggacgagggg
atgcgcgtcgaggccggtcaggtcctcgcggacggaccctgcaccgagaacggcgagatg
gcgctcggcaagaacctgctcgtggcgatcatgccgtgggagggtcacaactacgaggac
gcgatcatcctctcgcagcgactcgtggaggaggacgtgctcacgtccatccacatcgag
gagcacgagatcgacgcccgcgacaccaagctgggcgccgaggagatcacccgcgacatc
cccaacgtctccgacgaggtcctggcggacctggacgaccgcggcatcgtgcgcatcggc
gccgaggtccgtgacggcgacgtgctggtcggcaaggtcacgcccaagggcgagaccgag
ctcacccccgaggagcgcctgctgcgcgcgatcttcggtgagaaggcgcgcgaggtgcgc
gacacctcgctcaaggtgcctcacggcgagtccgggaaggtgatcggcgtccgcgtgttc
tcgcgcgacgacgacgacgacctgccccccggcgtgaacgagttggtccgggtctacgtg
gcgcagaagcgcaagatccaggacggcgacaagctcgccggccgccacggcaacaagggc
gtcatcggcaagatcctccccgccgaggacatgccgttcatgcccgacggcacacccgtg
gacatcatcctcaacacgcacggcgtcccgcgtcgtatgaacatcggtcagatcatggag
acccacctcggctggttggccaaggcgggctgggaggtgccccgcgaggcggacggttcc
ctccccgagtgggcgtccaagctgccggaggagatccacagcgtcgaggccggcaccaac
acggccacgcccgtcttcgacggcgcggcggacacggagatcaccggcctgctcggctgc
accctcccgaaccgcgacggggagcggatggtggaggccgacggcaaggcgaccctgatc
gacggtcggtcgggtgagcccttcccgtacccggtgtccgtggggtacatgtacatcctc
aagctgcaccacctggtggacgacaagatccacgcccgctccacgggtccgtactcgatg
atcacccagcagccgctcggcggtaaggcccagttcggtggccagcgcttcggtgagatg
gagtgctgggcgatgcaggcctacggtgccgcgtacaccctccaggagctgctcacgatc
aagtccgacgacgtcgtgggccgagtgaaggtgtacgaggcgatcgtcaagggggagaac
atccccgagcccgggatcccggagtcgttcaaggtcctgctcaaggagctgcagtcgctg
tgcctcaacgtcgaggtgctctccagcgacggtcaggcggtctcgttgggtgagggcgcc
gaggacgacgacctcgaccgcaccgccgcgaacctggggatcaacctctcccgggacgag
tcctcggccgcggacgagctggcgcagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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